Information for 5-AGTTAATGGTTAA (Motif 6)

C G T A C T A G A C G T C A G T C G T A G T C A A C G T C T A G A C T G G C A T A C G T C G T A G T C A
Reverse Opposite:
A C G T A C G T C G T A C G T A G T A C A G T C C G T A A C G T A C G T G T C A C G T A A G T C A C G T
p-value:1e-15
log p-value:-3.677e+01
Information Content per bp:1.835
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.0 +/- 27.5bp
Average Position of motif in Background82.0 +/- 0.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF1B/MA0153.2/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AGTTAATGGTTAA-
-GTTAATGATTAAC
 C G T A C T A G A C G T C A G T C G T A G T C A A C G T C T A G A C T G G C A T A C G T C G T A G T C A A C G T
A C G T C A T G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C T G A T C G A G A T C

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:2
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:AGTTAATGGTTAA--
--TTAATGTTTAACC
 C G T A C T A G A C G T C A G T C G T A G T C A A C G T C T A G A C T G G C A T A C G T C G T A G T C A A C G T A C G T
A C G T A C G T A C G T G C A T C T G A G T C A G C A T T A C G C G A T C A G T G A C T G C T A C G T A G A T C G A T C

HNF1A/MA0046.2/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AGTTAATGGTTAA--
NGTTAATNATTAACN
 C G T A C T A G A C G T C A G T C G T A G T C A A C G T C T A G A C T G G C A T A C G T C G T A G T C A A C G T A C G T
C G T A C A T G A G C T G C A T C T G A G T C A G C A T A T G C C G T A C A G T G A C T C G T A T C G A G A T C G A C T

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:4
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AGTTAATGGTTAA
-GTTAATNATTAA
 C G T A C T A G A C G T C A G T C G T A G T C A A C G T C T A G A C T G G C A T A C G T C G T A G T C A
A C G T C T A G A C G T G C A T T C G A G T C A G C A T A T C G C G T A C A G T A G C T C T G A T G C A

Hoxd8/MA0910.1/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AGTTAATGGTTAA
TAAATAATTAATGGCTA-
 A C G T A C G T A C G T A C G T A C G T C G T A C T A G A C G T C A G T C G T A G T C A A C G T C T A G A C T G G C A T A C G T C G T A G T C A
C A G T G C T A C T G A C G A T G A C T G C T A C G T A C G A T G C A T C G T A G C T A G A C T C T A G C T A G G A T C C G A T G C T A A C G T

PH0080.1_Hoxd8/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AGTTAATGGTTAA
TAAATAATTAATGGCTA-
 A C G T A C G T A C G T A C G T A C G T C G T A C T A G A C G T C A G T C G T A G T C A A C G T C T A G A C T G G C A T A C G T C G T A G T C A
C A G T G C T A C T G A C G A T G A C T G C T A C G T A C G A T G C A T C G T A G C T A G A C T C T A G C T A G G A T C C G A T G C T A A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGTTAATGGTTAA-
ACTATGAATGAATGAT
 A C G T A C G T C G T A C T A G A C G T C A G T C G T A G T C A A C G T C T A G A C T G G C A T A C G T C G T A G T C A A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGTTAATGGTTAA
-GTTAATGGCC--
 C G T A C T A G A C G T C A G T C G T A G T C A A C G T C T A G A C T G G C A T A C G T C G T A G T C A
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T

PH0018.1_Dbx1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGTTAATGGTTAA---
TAATTAATTAATAATTA
 A C G T C G T A C T A G A C G T C A G T C G T A G T C A A C G T C T A G A C T G G C A T A C G T C G T A G T C A A C G T A C G T A C G T
G A C T G C T A C T G A G C A T G C A T G C T A C G T A G C A T G C A T C G T A G C T A G C A T C G T A T C G A C G A T C G A T C T G A

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGTTAATGGTTAA-
--TGATTGGCTANN
 C G T A C T A G A C G T C A G T C G T A G T C A A C G T C T A G A C T G G C A T A C G T C G T A G T C A A C G T
A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T