Information for 5-TGTBGNCATGGCAACC (Motif 8)

A C G T T A C G A C G T A C G T A C T G G T A C G T A C G T C A G C A T C T A G A C T G G T A C T G C A T C G A G A T C T G A C
Reverse Opposite:
A C T G C A T G A C G T A C G T C A T G G T A C G A T C C G T A C A G T A C T G C A T G T G A C T G C A T G C A A G T C T G C A
p-value:1e-15
log p-value:-3.538e+01
Information Content per bp:1.639
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif2.84%
Number of Background Sequences with motif147.4
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets44.4 +/- 18.1bp
Average Position of motif in Background47.4 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:1
Score:0.86
Offset:1
Orientation:forward strand
Alignment:TGTBGNCATGGCAACC
-GTTGCCATGGCAACM
 A C G T T A C G A C G T A C G T A C T G G T A C G T A C G T C A G C A T C T A G A C T G G T A C T G C A T C G A G A T C T G A C
A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:2
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:TGTBGNCATGGCAACC-
-GTTGCCATGGCAACCG
 A C G T T A C G A C G T A C G T A C T G G T A C G T A C G T C A G C A T C T A G A C T G G T A C T G C A T C G A G A T C T G A C A C G T
A C G T C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.86
Offset:1
Orientation:forward strand
Alignment:TGTBGNCATGGCAACC
-GTTGCCATGGCAAC-
 A C G T T A C G A C G T A C G T A C T G G T A C G T A C G T C A G C A T C T A G A C T G G T A C T G C A T C G A G A T C T G A C
A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

RFX3/MA0798.1/Jaspar

Match Rank:4
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:TGTBGNCATGGCAACC
CGTTGCCATGGCAACN
 A C G T T A C G A C G T A C G T A C T G G T A C G T A C G T C A G C A T C T A G A C T G G T A C T G C A T C G A G A T C T G A C
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:5
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:TGTBGNCATGGCAACC
CGTTGCCATGGCAACG
 A C G T T A C G A C G T A C G T A C T G G T A C G T A C G T C A G C A T C T A G A C T G G T A C T G C A T C G A G A T C T G A C
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:TGTBGNCATGGCAACC
--TTGCCATGGCAACN
 A C G T T A C G A C G T A C G T A C T G G T A C G T A C G T C A G C A T C T A G A C T G G T A C T G C A T C G A G A T C T G A C
A C G T A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:TGTBGNCATGGCAACC
--TTGCCATGGCAACC
 A C G T T A C G A C G T A C G T A C T G G T A C G T A C G T C A G C A T C T A G A C T G G T A C T G C A T C G A G A T C T G A C
A C G T A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX5/MA0510.2/Jaspar

Match Rank:8
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:TGTBGNCATGGCAACC
NGTTGCCATGGCAACG
 A C G T T A C G A C G T A C G T A C T G G T A C G T A C G T C A G C A T C T A G A C T G G T A C T G C A T C G A G A T C T G A C
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:TGTBGNCATGGCAACC
CGTTGCCATGGCAACN
 A C G T T A C G A C G T A C G T A C T G G T A C G T A C G T C A G C A T C T A G A C T G G T A C T G C A T C G A G A T C T G A C
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.72
Offset:5
Orientation:forward strand
Alignment:TGTBGNCATGGCAACC-
-----SCCTAGCAACAG
 A C G T T A C G A C G T A C G T A C T G G T A C G T A C G T C A G C A T C T A G A C T G G T A C T G C A T C G A G A T C T G A C A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G