Information for 13-CGTCGCBTAGCAA (Motif 19)

A G T C A C T G C G A T A G T C A C T G A G T C A G C T A C G T C T G A A C T G A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T C T A G A G T C A G C T C G T A T C G A A C T G G T A C A C T G C G T A A G T C C T A G
p-value:1e-10
log p-value:-2.386e+01
Information Content per bp:1.865
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.3 +/- 20.4bp
Average Position of motif in Background71.8 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CGTCGCBTAGCAA--
TGTTKCCTAGCAACM
 A G T C A C T G C G A T A G T C A C T G A G T C A G C T A C G T C T G A A C T G A G T C C G T A C G T A A C G T A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CGTCGCBTAGCAA----
--CCGCATAGCAACGGA
 A G T C A C T G C G A T A G T C A C T G A G T C A G C T A C G T C T G A A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CGTCGCBTAGCAA--------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A G T C A C T G C G A T A G T C A C T G A G T C A G C T A C G T C T G A A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CGTCGCBTAGCAA----
--TACCATAGCAACGGT
 A G T C A C T G C G A T A G T C A C T G A G T C A G C T A C G T C T G A A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CGTCGCBTAGCAA---
----SCCTAGCAACAG
 A G T C A C T G C G A T A G T C A C T G A G T C A G C T A C G T C T G A A C T G A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0147.1_Max_2/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CGTCGCBTAGCAA
NNGTCGCGTGNCAC
 A C G T A G T C A C T G C G A T A G T C A C T G A G T C A G C T A C G T C T G A A C T G A G T C C G T A C G T A
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

PB0179.1_Sp100_2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CGTCGCBTAGCAA
TCCGTCGCTTAAAAG
 A C G T A C G T A G T C A C T G C G A T A G T C A C T G A G T C A G C T A C G T C T G A A C T G A G T C C G T A C G T A
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CGTCGCBTAGCAA
NTNNCGTATCCAAGTNN
 A C G T A C G T A C G T A C G T A G T C A C T G C G A T A G T C A C T G A G T C A G C T A C G T C T G A A C T G A G T C C G T A C G T A
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CGTCGCBTAGCAA
-----CTTGGCAA
 A G T C A C T G C G A T A G T C A C T G A G T C A G C T A C G T C T G A A C T G A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CGTCGCBTAGCAA-
GTTGCCATGGCAAC
 A G T C A C T G C G A T A G T C A C T G A G T C A G C T A C G T C T G A A C T G A G T C C G T A C G T A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C