Information for 8-GGCCGGAGAGGTCGCR (Motif 13)

A C T G C T A G G T A C A G T C T C A G A C T G C T G A A C T G G T C A A C T G A T C G A G C T A T G C T A C G A G T C T C G A
Reverse Opposite:
A G C T A C T G A G T C A T C G C T G A A T G C A G T C A C G T A G T C A G C T A G T C A G T C A C T G A C T G A G T C A G T C
p-value:1e-13
log p-value:-3.042e+01
Information Content per bp:1.796
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.8 +/- 29.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI2/MA0734.1/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGCCGGAGAGGTCGCR
---CAGTGTGGTCGC-
 A C T G C T A G G T A C A G T C T C A G A C T G C T G A A C T G G T C A A C T G A T C G A G C T A T G C T A C G A G T C T C G A
A C G T A C G T A C G T G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GGCCGGAGAGGTCGCR
------AGRGGTCA--
 A C T G C T A G G T A C A G T C T C A G A C T G C T G A A C T G G T C A A C T G A T C G A G C T A T G C T A C G A G T C T C G A
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:3
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GGCCGGAGAGGTCGCR
NNNACCGAGAGTNNN--
 A C G T A C T G C T A G G T A C A G T C T C A G A C T G C T G A A C T G G T C A A C T G A T C G A G C T A T G C T A C G A G T C T C G A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:4
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GGCCGGAGAGGTCGCR-
NGAGGTCANNGAGTTCANNN
 A C G T A C G T A C G T A C T G C T A G G T A C A G T C T C A G A C T G C T G A A C T G G T C A A C T G A T C G A G C T A T G C T A C G A G T C T C G A A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:5
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GGCCGGAGAGGTCGCR
RGKGGGCGGAGC-------
 A C G T A C G T A C G T A C T G C T A G G T A C A G T C T C A G A C T G C T G A A C T G G T C A A C T G A T C G A G C T A T G C T A C G A G T C T C G A
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GGCCGGAGAGGTCGCR
--CTTGAGTGGCT---
 A C T G C T A G G T A C A G T C T C A G A C T G C T G A A C T G G T C A A C T G A T C G A G C T A T G C T A C G A G T C T C G A
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:7
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GGCCGGAGAGGTCGCR
CAGGCCNNGGCCNN----
 A C G T A C G T A C T G C T A G G T A C A G T C T C A G A C T G C T G A A C T G G T C A A C T G A T C G A G C T A T G C T A C G A G T C T C G A
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.50
Offset:7
Orientation:forward strand
Alignment:GGCCGGAGAGGTCGCR
-------AAGGTCAC-
 A C T G C T A G G T A C A G T C T C A G A C T G C T G A A C T G G T C A A C T G A T C G A G C T A T G C T A C G A G T C T C G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

POL001.1_MTE/Jaspar

Match Rank:9
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----GGCCGGAGAGGTCGCR
TTTCGAGCGGAACGGTCGC-
 A C G T A C G T A C G T A C G T A C T G C T A G G T A C A G T C T C A G A C T G C T G A A C T G G T C A A C T G A T C G A G C T A T G C T A C G A G T C T C G A
A C G T G A C T A G C T A G T C C T A G C G T A C T A G A G T C A T C G T A C G C G T A C T A G A G T C A C T G A T C G C G A T G A T C T A C G A G C T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GGCCGGAGAGGTCGCR--
--TCTCAAAGGTCACCTG
 A C T G C T A G G T A C A G T C T C A G A C T G C T G A A C T G G T C A A C T G A T C G A G C T A T G C T A C G A G T C T C G A A C G T A C G T
A C G T A C G T C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G