Information for 24-CCTAGCATCG (Motif 26)

A G T C A G T C A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C T G
Reverse Opposite:
A G T C A C T G C G T A A C G T A C T G A G T C A C G T C G T A A C T G A C T G
p-value:1e-12
log p-value:-2.945e+01
Information Content per bp:1.530
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif4.79%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif1.52%
Average Position of motif in Targets46.4 +/- 25.0bp
Average Position of motif in Background76.2 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---CCTAGCATCG--
CCGCATAGCAACGGA
 A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C T G A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---CCTAGCATCG--
TACCATAGCAACGGT
 A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C T G A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.70
Offset:-7
Orientation:forward strand
Alignment:-------CCTAGCATCG------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCTAGCATCG-
SCCTAGCAACAG
 A C G T A G T C A G T C A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C T G A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:5
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CCTAGCATCG
TGTTKCCTAGCAACM
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C T G
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CCTAGCATCG
GTTGCCATGGCAAC-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C T G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCTAGCATCG-
-ATTGCATCAK
 A G T C A G T C A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C T G A C G T
A C G T T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCTAGCATCG-
-ATTGCATCAT
 A G T C A G T C A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C T G A C G T
A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CCTAGCATCG
BTVATTWGCATA-
 A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C T G
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CCTAGCATCG
GGCTCYAKCAYC-
 A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C T G A G T C C G T A A C G T A G T C A C T G
C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C A C G T