Information for 8-SCMTGGCAGCTCC (Motif 23)

A T C G A G T C G T A C G C A T A C T G A C T G A T G C G C T A T A C G A G T C A G C T A T G C G T A C
Reverse Opposite:
A C T G A T C G C T G A T C A G A T G C C G A T T A C G T A G C G T A C C G T A A C T G A C T G A T G C
p-value:1e-21
log p-value:-4.992e+01
Information Content per bp:1.883
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif4.57%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.88%
Average Position of motif in Targets55.5 +/- 26.0bp
Average Position of motif in Background51.5 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:SCMTGGCAGCTCC
-CTTGGCAA----
 A T C G A G T C G T A C G C A T A C T G A C T G A T G C G C T A T A C G A G T C A G C T A T G C G T A C
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.63
Offset:8
Orientation:forward strand
Alignment:SCMTGGCAGCTCC-
--------GCTCCG
 A T C G A G T C G T A C G C A T A C T G A C T G A T G C G C T A T A C G A G T C A G C T A T G C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----SCMTGGCAGCTCC
GTTGCCATGGCAAC---
 A C G T A C G T A C G T A C G T A T C G A G T C G T A C G C A T A C T G A C T G A T G C G C T A T A C G A G T C A G C T A T G C G T A C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:4
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:SCMTGGCAGCTCC-
----CGCAGCTGCG
 A T C G A G T C G T A C G C A T A C T G A C T G A T G C G C T A T A C G A G T C A G C T A T G C G T A C A C G T
A C G T A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

Ascl2/MA0816.1/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:SCMTGGCAGCTCC-
----AGCAGCTGCT
 A T C G A G T C G T A C G C A T A C T G A C T G A T G C G C T A T A C G A G T C A G C T A T G C G T A C A C G T
A C G T A C G T A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

PH0169.1_Tgif1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--SCMTGGCAGCTCC--
GATATTGACAGCTGCGT
 A C G T A C G T A T C G A G T C G T A C G C A T A C T G A C T G A T G C G C T A T A C G A G T C A G C T A T G C G T A C A C G T A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:SCMTGGCAGCTCC
SCCTAGCAACAG-
 A T C G A G T C G T A C G C A T A C T G A C T G A T G C G C T A T A C G A G T C A G C T A T G C G T A C
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:SCMTGGCAGCTCC
-SCTGTCARCACC
 A T C G A G T C G T A C G C A T A C T G A C T G A T G C G C T A T A C G A G T C A G C T A T G C G T A C
A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

Myog/MA0500.1/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:SCMTGGCAGCTCC--
----GACAGCTGCAG
 A T C G A G T C G T A C G C A T A C T G A C T G A T G C G C T A T A C G A G T C A G C T A T G C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:SCMTGGCAGCTCC---
----AGCAGCTGCTNN
 A T C G A G T C G T A C G C A T A C T G A C T G A T G C G C T A T A C G A G T C A G C T A T G C G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C