Information for 2-AGAGAGCGCCCTCCAG (Motif 4)

G T C A A C T G G C T A A T C G C G T A T A C G G A T C A T C G A G T C A T G C A G T C A C G T T A G C A G T C C T G A A C T G
Reverse Opposite:
G T A C A G C T C T A G A T C G C G T A A C T G A T C G A C T G A T G C C A T G A T G C G A C T A T G C C G A T A G T C A C G T
p-value:1e-21
log p-value:-4.895e+01
Information Content per bp:1.768
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.1 +/- 17.8bp
Average Position of motif in Background69.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:AGAGAGCGCCCTCCAG
------NSCACTYVAV
 G T C A A C T G G C T A A T C G C G T A T A C G G A T C A T C G A G T C A T G C A G T C A C G T T A G C A G T C C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AGAGAGCGCCCTCCAG----
---AATCGCACTGCATTCCG
 G T C A A C T G G C T A A T C G C G T A T A C G G A T C A T C G A G T C A T G C A G T C A C G T T A G C A G T C C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

PB0052.1_Plagl1_1/Jaspar

Match Rank:3
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGCGCCCTCCAG
TTGGGGGCGCCCCTAG-
 A C G T G T C A A C T G G C T A A T C G C G T A T A C G G A T C A T C G A G T C A T G C A G T C A C G T T A G C A G T C C T G A A C T G
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G A C G T

POL006.1_BREu/Jaspar

Match Rank:4
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AGAGAGCGCCCTCCAG
--AGCGCGCC------
 G T C A A C T G G C T A A T C G C G T A T A C G G A T C A T C G A G T C A T G C A G T C A C G T T A G C A G T C C T G A A C T G
A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.51
Offset:5
Orientation:forward strand
Alignment:AGAGAGCGCCCTCCAG
-----AASCACTCAA-
 G T C A A C T G G C T A A T C G C G T A T A C G G A T C A T C G A G T C A T G C A G T C A C G T T A G C A G T C C T G A A C T G
A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.50
Offset:4
Orientation:forward strand
Alignment:AGAGAGCGCCCTCCAG---
----GGCCYCCTGCTGDGH
 G T C A A C T G G C T A A T C G C G T A T A C G G A T C A T C G A G T C A T G C A G T C A C G T T A G C A G T C C T G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--AGAGAGCGCCCTCCAG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T G T C A A C T G G C T A A T C G C G T A T A C G G A T C A T C G A G T C A T G C A G T C A C G T T A G C A G T C C T G A A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

Klf12/MA0742.1/Jaspar

Match Rank:8
Score:0.49
Offset:1
Orientation:forward strand
Alignment:AGAGAGCGCCCTCCAG
-GACCACGCCCTTATT
 G T C A A C T G G C T A A T C G C G T A T A C G G A T C A T C G A G T C A T G C A G T C A C G T T A G C A G T C C T G A A C T G
A C G T C A T G T C G A G T A C T A G C T G C A G T A C C T A G A G T C A G T C A G T C G C A T G C A T G C T A G C A T G C A T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:9
Score:0.49
Offset:6
Orientation:forward strand
Alignment:AGAGAGCGCCCTCCAG---
------TGCCCTGAGGGCA
 G T C A A C T G G C T A A T C G C G T A T A C G G A T C A T C G A G T C A T G C A G T C A C G T T A G C A G T C C T G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.49
Offset:6
Orientation:forward strand
Alignment:AGAGAGCGCCCTCCAG
------RSCACTYRAG
 G T C A A C T G G C T A A T C G C G T A T A C G G A T C A T C G A G T C A T G C A G T C A C G T T A G C A G T C C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G