Information for 5-CACGTGATCG (Motif 3)

T A G C G T C A A G T C C A T G C A G T A T C G T G C A A C G T A T G C T C A G
Reverse Opposite:
A G T C T A C G T G C A A C G T T A G C G T C A G T A C T C A G C A G T A T C G
p-value:1e-22
log p-value:-5.093e+01
Information Content per bp:1.545
Number of Target Sequences with motif142.0
Percentage of Target Sequences with motif16.99%
Number of Background Sequences with motif3190.1
Percentage of Background Sequences with motif6.92%
Average Position of motif in Targets54.6 +/- 21.9bp
Average Position of motif in Background50.3 +/- 36.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MLXIPL/MA0664.1/Jaspar

Match Rank:1
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--CACGTGATCG
ATCACGTGAT--
A C G T A C G T T A G C G T C A A G T C C A T G C A G T A T C G T G C A A C G T A T G C T C A G
C T G A C G A T A G T C G T C A A G T C A T C G G C A T A T C G G T C A G A C T A C G T A C G T

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGATCG
TCACGTGACC-
A C G T T A G C G T C A A G T C C A T G C A G T A T C G T G C A A C G T A T G C T C A G
A G C T A G T C G T C A A G T C C T A G A C G T A T C G T C G A A G T C A T G C A C G T

Arntl/MA0603.1/Jaspar

Match Rank:3
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGATCG
NCACGTGACN-
A C G T T A G C G T C A A G T C C A T G C A G T A T C G T G C A A C G T A T G C T C A G
C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C A C G T

Id2/MA0617.1/Jaspar

Match Rank:4
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-CACGTGATCG
GCACGTGA---
A C G T T A G C G T C A A G T C C A T G C A G T A T C G T G C A A C G T A T G C T C A G
T C A G A G T C C G T A A G T C A C T G A C G T A C T G C T G A A C G T A C G T A C G T

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-CACGTGATCG
KCACGTGMCN-
A C G T T A G C G T C A A G T C C A T G C A G T A T C G T G C A A C G T A T G C T C A G
C A T G G T A C C G T A A G T C C T A G A C G T A C T G G T A C A G T C A G C T A C G T

BHLHE40/MA0464.2/Jaspar

Match Rank:6
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--CACGTGATCG
GTCACGTGAN--
A C G T A C G T T A G C G T C A A G T C C A T G C A G T A T C G T G C A A C G T A T G C T C A G
C T A G C A G T T G A C C T G A A G T C C T A G A C G T C A T G G T C A A C G T A C G T A C G T

TFE3/MA0831.1/Jaspar

Match Rank:7
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--CACGTGATCG
ATCACGTGAC--
A C G T A C G T T A G C G T C A A G T C C A T G C A G T A T C G T G C A A C G T A T G C T C A G
T C G A A G C T A T G C G C T A A G T C T C A G G C A T A C T G T G C A G A T C A C G T A C G T

MLX/MA0663.1/Jaspar

Match Rank:8
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--CACGTGATCG
ATCACGTGAT--
A C G T A C G T T A G C G T C A A G T C C A T G C A G T A T C G T G C A A C G T A T G C T C A G
C T G A A C G T A G T C C T G A A G T C C A T G C G A T C A T G C T G A G A C T A C G T A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--CACGTGATCG
NVCACGTG----
A C G T A C G T T A G C G T C A A G T C C A T G C A G T A T C G T G C A A C G T A T G C T C A G
C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T A C G T A C G T A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:CACGTGATCG
CACGTGDC--
T A G C G T C A A G T C C A T G C A G T A T C G T G C A A C G T A T G C T C A G
G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C A C G T A C G T