Information for 13-TGAGAGACATGAC (Motif 20)

A C G T C T A G C G T A A C T G C G T A A C T G C T G A A G T C G T C A A C G T A C T G C G T A A T G C
Reverse Opposite:
A T C G C G A T G T A C C G T A A C G T A C T G A G C T A G T C A C G T A G T C A C G T A G T C C G T A
p-value:1e-9
log p-value:-2.240e+01
Information Content per bp:1.926
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.7 +/- 30.4bp
Average Position of motif in Background39.4 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGAGAGACATGAC
NTGATTGACAGN--
 A C G T A C G T C T A G C G T A A C T G C G T A A C T G C T G A A G T C G T C A A C G T A C T G C G T A A T G C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGAGAGACATGAC
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T C T A G C G T A A C T G C G T A A C T G C T G A A G T C G T C A A C G T A C T G C G T A A T G C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGAGAGACATGAC
AGGTGNCAGACAG---
 A C G T A C G T A C G T A C G T C T A G C G T A A C T G C G T A A C T G C T G A A G T C G T C A A C G T A C T G C G T A A T G C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGAGAGACATGAC
BTGABTGACAGS--
 A C G T A C G T C T A G C G T A A C T G C G T A A C T G C T G A A G T C G T C A A C G T A C T G C G T A A T G C
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGAGAGACATGAC
TGAGTGACAGSC-
 A C G T C T A G C G T A A C T G C G T A A C T G C T G A A G T C G T C A A C G T A C T G C G T A A T G C
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:6
Score:0.60
Offset:7
Orientation:forward strand
Alignment:TGAGAGACATGAC
-------CATGAC
 A C G T C T A G C G T A A C T G C G T A A C T G C T G A A G T C G T C A A C G T A C T G C G T A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C

Pax2/MA0067.1/Jaspar

Match Rank:7
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:TGAGAGACATGAC-
------NCGTGACN
 A C G T C T A G C G T A A C T G C G T A A C T G C T G A A G T C G T C A A C G T A C T G C G T A A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGAGAGACATGAC
GGTTAGAGACCT---
 A C G T A C G T A C G T C T A G C G T A A C T G C G T A A C T G C T G A A G T C G T C A A C G T A C T G C G T A A T G C
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGAGAGACATGAC
CTTGAGTGGCT----
 A C G T A C G T A C G T C T A G C G T A A C T G C G T A A C T G C T G A A G T C G T C A A C G T A C T G C G T A A T G C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TGAGAGACATGAC--
---GWAAYHTGABMC
 A C G T C T A G C G T A A C T G C G T A A C T G C T G A A G T C G T C A A C G T A C T G C G T A A T G C A C G T A C G T
A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C