Information for 7-GCGCCGAGCCAAT (Motif 9)

C T A G A G T C A C T G A G T C A T G C A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C T G A C T G A G T C A C G T A T G C A T C G A C T G A G T C A C T G A G T C
p-value:1e-12
log p-value:-2.820e+01
Information Content per bp:1.949
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.5 +/- 26.6bp
Average Position of motif in Background38.5 +/- 14.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.66
Offset:6
Orientation:forward strand
Alignment:GCGCCGAGCCAAT---
------AGCCAATCGG
 C T A G A G T C A C T G A G T C A T G C A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCGCCGAGCCAAT--
---ACTAGCCAATCA
 C T A G A G T C A C T G A G T C A T G C A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCGCCGAGCCAAT
TGGCACCATGCCAA-
 A C G T A C G T C T A G A G T C A C T G A G T C A T G C A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:GCGCCGAGCCAAT
------TGCCAA-
 C T A G A G T C A C T G A G T C A T G C A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GCGCCGAGCCAAT
----CGTGCCAAG
 C T A G A G T C A C T G A G T C A T G C A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCGCCGAGCCAAT---
-AAATGGACCAATCAG
 C T A G A G T C A C T G A G T C A T G C A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

PB0113.1_E2F3_2/Jaspar

Match Rank:7
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------GCGCCGAGCCAAT
NNNNTTGGCGCCGANNN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C A C T G A G T C A T G C A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCGCCGAGCCAAT
CTTGGCANNNTGCCAA-
 A C G T A C G T A C G T A C G T C T A G A G T C A C T G A G T C A T G C A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCGCCGAGCCAAT
GCCGCGCAGTGCGT--
 A C G T A C G T A C G T C T A G A G T C A C T G A G T C A T G C A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:10
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------GCGCCGAGCCAAT
NNNNTTGGCGCCGANNN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C A C T G A G T C A T G C A T C G C G T A A C T G A G T C A G T C C G T A C G T A A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G A C G T A C G T A C G T