Information for 2-CCACCAGGTGGCG (Motif 2)

A G T C A G T C G C T A A T G C A T G C C G T A A T C G T A C G C A G T A C T G A C T G G T A C T C A G
Reverse Opposite:
A G T C C A T G T A G C A G T C G T C A A G T C T A G C C G A T T A C G A T C G C G A T A C T G C T A G
p-value:1e-24
log p-value:-5.737e+01
Information Content per bp:1.714
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif5.35%
Number of Background Sequences with motif230.5
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets49.4 +/- 25.3bp
Average Position of motif in Background51.1 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGTGGCG------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C G C T A A T G C A T G C C G T A A T C G T A C G C A G T A C T G A C T G G T A C T C A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---CCACCAGGTGGCG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C G C T A A T G C A T G C C G T A A T C G T A C G C A G T A C T G A C T G G T A C T C A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---CCACCAGGTGGCG----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C G C T A A T G C A T G C C G T A A T C G T A C G C A G T A C T G A C T G G T A C T C A G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGTGGCG
CCCCCCCGGGGGNN
 A C G T A G T C A G T C G C T A A T G C A T G C C G T A A T C G T A C G C A G T A C T G A C T G G T A C T C A G
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

PB0103.1_Zic3_1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGTGGCG
NCCCCCCCGGGGGGN
 A C G T A C G T A G T C A G T C G C T A A T G C A T G C C G T A A T C G T A C G C A G T A C T G A C T G G T A C T C A G
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGTGGCG
ACCCCCCCGGGGGGN
 A C G T A C G T A G T C A G T C G C T A A T G C A T G C C G T A A T C G T A C G C A G T A C T G A C T G G T A C T C A G
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

FIGLA/MA0820.1/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CCACCAGGTGGCG
--AACAGGTGNT-
 A G T C A G T C G C T A A T G C A T G C C G T A A T C G T A C G C A G T A C T G A C T G G T A C T C A G
A C G T A C G T G C T A T G C A G T A C G C T A A T C G A T C G C A G T C T A G C A T G C G A T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGTGGCG
DCHCAGCAGGRGGCC
 A C G T A C G T A G T C A G T C G C T A A T G C A T G C C G T A A T C G T A C G C A G T A C T G A C T G G T A C T C A G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCACCAGGTGGCG
--NNCAGGTGNN-
 A G T C A G T C G C T A A T G C A T G C C G T A A T C G T A C G C A G T A C T G A C T G G T A C T C A G
A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCACCAGGTGGCG
-NNCCACGTGG--
 A G T C A G T C G C T A A T G C A T G C C G T A A T C G T A C G C A G T A C T G A C T G G T A C T C A G
A C G T T A C G T C G A T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A C G T A C G T