Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 713)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46794)	% of Background Sequences with Motif
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-221	-5.090e+02	0.0000	249.0	34.92%	1001.4	2.14%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-215	-4.964e+02	0.0000	233.0	32.68%	845.5	1.81%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-183	-4.232e+02	0.0000	266.0	37.31%	1749.9	3.75%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-128	-2.968e+02	0.0000	131.0	18.37%	384.1	0.82%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-82	-1.899e+02	0.0000	72.0	10.10%	140.3	0.30%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-81	-1.887e+02	0.0000	98.0	13.74%	403.3	0.86%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-56	-1.310e+02	0.0000	53.0	7.43%	122.8	0.26%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-56	-1.295e+02	0.0000	139.0	19.50%	1754.5	3.76%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-53	-1.228e+02	0.0000	77.0	10.80%	448.7	0.96%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-51	-1.187e+02	0.0000	88.0	12.34%	673.6	1.44%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-48	-1.126e+02	0.0000	113.0	15.85%	1305.4	2.80%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-47	-1.105e+02	0.0000	122.0	17.11%	1575.7	3.37%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-47	-1.091e+02	0.0000	111.0	15.57%	1301.8	2.79%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-47	-1.083e+02	0.0000	102.0	14.31%	1087.8	2.33%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-45	-1.042e+02	0.0000	118.0	16.55%	1565.0	3.35%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-43	-9.965e+01	0.0000	41.0	5.75%	99.5	0.21%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-11	-2.559e+01	0.0000	128.0	17.95%	4510.2	9.66%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-7	-1.776e+01	0.0000	13.0	1.82%	107.9	0.23%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-6	-1.611e+01	0.0000	15.0	2.10%	170.9	0.37%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-6	-1.406e+01	0.0000	206.0	28.89%	9897.2	21.20%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-4	-1.040e+01	0.0005	76.0	10.66%	3072.7	6.58%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-4	-1.027e+01	0.0006	188.0	26.37%	9398.2	20.13%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-4	-9.427e+00	0.0013	27.0	3.79%	769.5	1.65%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-3	-7.540e+00	0.0081	69.0	9.68%	2997.0	6.42%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-3	-7.535e+00	0.0081	55.0	7.71%	2253.4	4.83%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-3	-7.404e+00	0.0085	26.0	3.65%	831.6	1.78%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-3	-7.185e+00	0.0102	53.0	7.43%	2183.3	4.68%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-3	-7.021e+00	0.0116	161.0	22.58%	8358.4	17.90%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-2	-6.779e+00	0.0143	83.0	11.64%	3861.8	8.27%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-2	-6.644e+00	0.0158	85.0	11.92%	3992.0	8.55%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-2	-6.587e+00	0.0162	9.0	1.26%	169.9	0.36%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-2	-6.314e+00	0.0206	9.0	1.26%	176.9	0.38%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-2	-5.898e+00	0.0303	12.0	1.68%	301.1	0.64%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-2	-5.854e+00	0.0307	13.0	1.82%	343.1	0.73%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-5.622e+00	0.0376	90.0	12.62%	4432.3	9.49%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-5.591e+00	0.0377	15.0	2.10%	439.9	0.94%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-2	-5.444e+00	0.0425	25.0	3.51%	912.7	1.95%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-2	-5.315e+00	0.0471	37.0	5.19%	1532.0	3.28%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-2	-5.287e+00	0.0472	78.0	10.94%	3797.8	8.13%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-5.188e+00	0.0508	79.0	11.08%	3870.9	8.29%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-5.160e+00	0.0510	226.0	31.70%	12771.4	27.35%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-2	-5.042e+00	0.0560	21.0	2.95%	747.3	1.60%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-2	-5.027e+00	0.0560	35.0	4.91%	1456.2	3.12%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-2	-4.797e+00	0.0683	61.0	8.56%	2906.1	6.22%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-4.452e+00	0.0943	62.0	8.70%	3015.0	6.46%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-4.410e+00	0.0961	27.0	3.79%	1099.5	2.35%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-4.280e+00	0.1072	6.0	0.84%	126.0	0.27%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-4.255e+00	0.1076	87.0	12.20%	4501.6	9.64%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-4.210e+00	0.1103	36.0	5.05%	1598.2	3.42%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-1	-4.032e+00	0.1292	17.0	2.38%	625.4	1.34%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-4.013e+00	0.1292	55.0	7.71%	2685.1	5.75%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-3.890e+00	0.1432	7.0	0.98%	177.0	0.38%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-3.824e+00	0.1501	24.0	3.37%	999.0	2.14%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-1	-3.657e+00	0.1740	42.0	5.89%	2002.4	4.29%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-1	-3.620e+00	0.1772	20.0	2.81%	810.9	1.74%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-3.591e+00	0.1793	210.0	29.45%	12231.2	26.20%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-3.562e+00	0.1812	2.0	0.28%	17.2	0.04%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-3.333e+00	0.2239	10.0	1.40%	335.9	0.72%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-3.333e+00	0.2239	34.0	4.77%	1599.4	3.43%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-3.204e+00	0.2462	8.0	1.12%	250.5	0.54%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.176e+00	0.2490	13.0	1.82%	491.0	1.05%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-3.013e+00	0.2885	18.0	2.52%	763.7	1.64%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-3.012e+00	0.2885	68.0	9.54%	3631.1	7.78%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.984e+00	0.2885	14.0	1.96%	557.9	1.19%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-2.982e+00	0.2885	9.0	1.26%	309.3	0.66%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-2.960e+00	0.2885	25.0	3.51%	1148.8	2.46%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-2.842e+00	0.3168	47.0	6.59%	2423.5	5.19%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-2.820e+00	0.3190	5.0	0.70%	136.4	0.29%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-2.569e+00	0.4043	8.0	1.12%	287.9	0.62%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.556e+00	0.4043	32.0	4.49%	1601.8	3.43%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-2.538e+00	0.4052	10.0	1.40%	389.7	0.83%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-2.477e+00	0.4246	9.0	1.26%	343.3	0.74%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-2.470e+00	0.4246	13.0	1.82%	551.3	1.18%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-2.443e+00	0.4276	28.0	3.93%	1389.7	2.98%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.433e+00	0.4276	4.0	0.56%	109.2	0.23%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-2.430e+00	0.4276	33.0	4.63%	1680.7	3.60%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.417e+00	0.4276	12.0	1.68%	503.6	1.08%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-2.372e+00	0.4353	3.0	0.42%	70.1	0.15%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-2.366e+00	0.4353	72.0	10.10%	4029.1	8.63%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-2.315e+00	0.4492	204.0	28.61%	12330.0	26.41%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.310e+00	0.4492	23.0	3.23%	1123.3	2.41%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.297e+00	0.4492	22.0	3.09%	1068.2	2.29%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.253e+00	0.4609	14.0	1.96%	627.3	1.34%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.249e+00	0.4609	91.0	12.76%	5232.9	11.21%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.233e+00	0.4609	56.0	7.85%	3090.9	6.62%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.220e+00	0.4609	7.0	0.98%	261.3	0.56%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.179e+00	0.4736	5.0	0.70%	166.2	0.36%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.145e+00	0.4842	14.0	1.96%	639.1	1.37%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.133e+00	0.4845	3.0	0.42%	78.3	0.17%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.101e+00	0.4946	38.0	5.33%	2037.5	4.36%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.083e+00	0.4981	12.0	1.68%	536.9	1.15%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-2.071e+00	0.4986	46.0	6.45%	2524.5	5.41%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.069e+00	0.4986	49.0	6.87%	2706.6	5.80%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.057e+00	0.4986	45.0	6.31%	2467.2	5.28%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.031e+00	0.5029	21.0	2.95%	1050.4	2.25%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-2.018e+00	0.5038	45.0	6.31%	2476.5	5.30%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.001e+00	0.5072	11.0	1.54%	491.0	1.05%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.998e+00	0.5072	10.0	1.40%	436.1	0.93%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.977e+00	0.5093	13.0	1.82%	603.4	1.29%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.954e+00	0.5109	5.0	0.70%	179.9	0.39%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.954e+00	0.5109	5.0	0.70%	179.7	0.38%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.953e+00	0.5109	24.0	3.37%	1237.7	2.65%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.875e+00	0.5419	28.0	3.93%	1487.7	3.19%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.833e+00	0.5600	23.0	3.23%	1199.5	2.57%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.828e+00	0.5600	41.0	5.75%	2279.6	4.88%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.773e+00	0.5830	11.0	1.54%	515.8	1.10%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.754e+00	0.5890	18.0	2.52%	919.2	1.97%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.714e+00	0.6073	8.0	1.12%	355.4	0.76%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.714e+00	0.6073	4.0	0.56%	144.7	0.31%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.684e+00	0.6140	34.0	4.77%	1889.0	4.05%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.680e+00	0.6140	3.0	0.42%	97.1	0.21%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.657e+00	0.6195	44.0	6.17%	2506.9	5.37%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.643e+00	0.6232	19.0	2.66%	996.2	2.13%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.637e+00	0.6232	2.0	0.28%	53.5	0.11%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.633e+00	0.6232	4.0	0.56%	149.5	0.32%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.617e+00	0.6232	4.0	0.56%	150.3	0.32%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.604e+00	0.6254	15.0	2.10%	767.3	1.64%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.584e+00	0.6327	6.0	0.84%	258.5	0.55%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.583e+00	0.6327	26.0	3.65%	1426.3	3.05%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.563e+00	0.6356	3.0	0.42%	103.2	0.22%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.540e+00	0.6450	39.0	5.47%	2230.3	4.78%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.537e+00	0.6450	58.0	8.13%	3410.2	7.30%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.531e+00	0.6450	11.0	1.54%	545.1	1.17%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.499e+00	0.6558	30.0	4.21%	1688.1	3.62%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.475e+00	0.6659	1.0	0.14%	17.4	0.04%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.474e+00	0.6659	6.0	0.84%	268.3	0.57%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.471e+00	0.6659	14.0	1.96%	729.2	1.56%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.467e+00	0.6659	23.0	3.23%	1270.0	2.72%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.463e+00	0.6659	6.0	0.84%	270.0	0.58%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.460e+00	0.6659	66.0	9.26%	3938.8	8.44%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.441e+00	0.6659	4.0	0.56%	162.5	0.35%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.429e+00	0.6659	5.0	0.70%	217.8	0.47%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.409e+00	0.6691	14.0	1.96%	739.6	1.58%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.402e+00	0.6691	32.0	4.49%	1835.0	3.93%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.391e+00	0.6712	29.0	4.07%	1653.5	3.54%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.366e+00	0.6829	27.0	3.79%	1536.9	3.29%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.363e+00	0.6829	2.0	0.28%	64.6	0.14%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.356e+00	0.6829	3.0	0.42%	116.0	0.25%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.339e+00	0.6861	8.0	1.12%	396.8	0.85%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.335e+00	0.6861	1.0	0.14%	20.5	0.04%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.319e+00	0.6904	97.0	13.60%	5962.5	12.77%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.312e+00	0.6904	23.0	3.23%	1303.2	2.79%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.310e+00	0.6904	3.0	0.42%	118.6	0.25%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.308e+00	0.6904	58.0	8.13%	3490.1	7.48%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.301e+00	0.6904	24.0	3.37%	1367.3	2.93%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.293e+00	0.6904	1.0	0.14%	21.1	0.05%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.292e+00	0.6904	22.0	3.09%	1246.3	2.67%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.240e+00	0.7121	20.0	2.81%	1135.2	2.43%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.239e+00	0.7121	24.0	3.37%	1382.0	2.96%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.236e+00	0.7121	10.0	1.40%	528.6	1.13%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.232e+00	0.7121	7.0	0.98%	351.3	0.75%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.223e+00	0.7121	30.0	4.21%	1759.5	3.77%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.197e+00	0.7186	49.0	6.87%	2962.4	6.34%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.193e+00	0.7186	4.0	0.56%	182.3	0.39%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.181e+00	0.7212	117.0	16.41%	7314.9	15.67%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.150e+00	0.7389	13.0	1.82%	724.9	1.55%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.133e+00	0.7469	37.0	5.19%	2226.5	4.77%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.126e+00	0.7469	17.0	2.38%	975.4	2.09%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.098e+00	0.7635	25.0	3.51%	1481.5	3.17%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.092e+00	0.7636	73.0	10.24%	4535.9	9.72%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.084e+00	0.7643	39.0	5.47%	2369.4	5.07%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.062e+00	0.7771	9.0	1.26%	495.5	1.06%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.050e+00	0.7818	9.0	1.26%	497.7	1.07%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.043e+00	0.7822	3.0	0.42%	138.2	0.30%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.027e+00	0.7900	4.0	0.56%	198.5	0.43%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.017e+00	0.7931	11.0	1.54%	626.7	1.34%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.015e+00	0.7931	14.0	1.96%	813.9	1.74%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.012e+00	0.7931	33.0	4.63%	2013.5	4.31%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-9.987e-01	0.7934	4.0	0.56%	201.7	0.43%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-9.861e-01	0.7987	3.0	0.42%	143.8	0.31%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-9.776e-01	0.8008	39.0	5.47%	2408.5	5.16%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-9.357e-01	0.8302	4.0	0.56%	208.9	0.45%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-9.237e-01	0.8354	18.0	2.52%	1087.9	2.33%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-9.057e-01	0.8457	54.0	7.57%	3402.2	7.29%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-9.025e-01	0.8457	33.0	4.63%	2052.3	4.40%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-8.986e-01	0.8457	6.0	0.84%	336.2	0.72%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-8.885e-01	0.8458	25.0	3.51%	1544.0	3.31%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-8.835e-01	0.8458	74.0	10.38%	4706.8	10.08%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-8.698e-01	0.8521	149.0	20.90%	9586.0	20.53%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-8.540e-01	0.8609	2.0	0.28%	95.7	0.20%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-8.442e-01	0.8645	14.0	1.96%	853.6	1.83%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.409e-01	0.8645	122.0	17.11%	7850.3	16.81%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-8.398e-01	0.8645	1.0	0.14%	37.9	0.08%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-8.367e-01	0.8645	24.0	3.37%	1497.6	3.21%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-8.227e-01	0.8645	8.0	1.12%	475.6	1.02%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-8.169e-01	0.8646	3.0	0.42%	160.3	0.34%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-7.757e-01	0.8962	25.0	3.51%	1583.8	3.39%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-7.708e-01	0.8962	44.0	6.17%	2819.4	6.04%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-7.519e-01	0.9080	2.0	0.28%	104.9	0.22%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-7.386e-01	0.9153	34.0	4.77%	2183.5	4.68%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-7.164e-01	0.9310	3.0	0.42%	172.4	0.37%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-7.137e-01	0.9310	16.0	2.24%	1020.0	2.18%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-7.006e-01	0.9360	21.0	2.95%	1350.1	2.89%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.005e-01	0.9360	84.0	11.78%	5471.2	11.72%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.943e-01	0.9360	18.0	2.52%	1156.4	2.48%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.936e-01	0.9360	51.0	7.15%	3316.7	7.10%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.908e-01	0.9360	24.0	3.37%	1550.5	3.32%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.886e-01	0.9360	62.0	8.70%	4039.5	8.65%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-6.834e-01	0.9360	13.0	1.82%	832.3	1.78%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.722e-01	0.9360	7.0	0.98%	441.9	0.95%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-6.541e-01	0.9415	41.0	5.75%	2682.1	5.74%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.529e-01	0.9415	5.0	0.70%	313.3	0.67%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.517e-01	0.9415	17.0	2.38%	1106.0	2.37%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-6.425e-01	0.9415	3.0	0.42%	182.4	0.39%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-6.369e-01	0.9415	2.0	0.28%	116.8	0.25%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-6.345e-01	0.9415	22.0	3.09%	1441.8	3.09%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-6.295e-01	0.9415	21.0	2.95%	1377.4	2.95%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-6.290e-01	0.9415	38.0	5.33%	2498.7	5.35%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.219e-01	0.9415	3.0	0.42%	185.2	0.40%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-6.217e-01	0.9415	14.0	1.96%	917.6	1.97%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-6.167e-01	0.9415	12.0	1.68%	786.8	1.69%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-6.017e-01	0.9415	7.0	0.98%	457.6	0.98%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-5.992e-01	0.9415	15.0	2.10%	991.2	2.12%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-5.920e-01	0.9415	31.0	4.35%	2055.3	4.40%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-5.769e-01	0.9508	29.0	4.07%	1930.7	4.14%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-5.752e-01	0.9508	6.0	0.84%	396.9	0.85%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-5.577e-01	0.9603	9.0	1.26%	603.9	1.29%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.572e-01	0.9603	7.0	0.98%	468.6	1.00%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-5.567e-01	0.9603	25.0	3.51%	1674.8	3.59%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-5.518e-01	0.9603	26.0	3.65%	1743.2	3.73%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.450e-01	0.9603	53.0	7.43%	3540.3	7.58%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-5.442e-01	0.9603	51.0	7.15%	3408.3	7.30%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-5.413e-01	0.9603	2.0	0.28%	128.5	0.28%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-5.146e-01	0.9713	57.0	7.99%	3827.8	8.20%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-5.118e-01	0.9713	50.0	7.01%	3364.3	7.21%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-5.004e-01	0.9765	1.0	0.14%	61.0	0.13%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-4.937e-01	0.9788	44.0	6.17%	2977.4	6.38%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-4.869e-01	0.9811	14.0	1.96%	966.7	2.07%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-4.433e-01	1.0000	2.0	0.28%	143.9	0.31%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.433e-01	1.0000	2.0	0.28%	143.8	0.31%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.405e-01	1.0000	10.0	1.40%	710.0	1.52%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-4.365e-01	1.0000	1.0	0.14%	68.0	0.15%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.319e-01	1.0000	38.0	5.33%	2618.2	5.61%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-4.258e-01	1.0000	11.0	1.54%	785.0	1.68%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.163e-01	1.0000	5.0	0.70%	367.0	0.79%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-4.084e-01	1.0000	21.0	2.95%	1481.9	3.17%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-4.084e-01	1.0000	13.0	1.82%	931.1	1.99%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.984e-01	1.0000	37.0	5.19%	2575.6	5.52%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.970e-01	1.0000	1.0	0.14%	73.6	0.16%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.879e-01	1.0000	68.0	9.54%	4670.7	10.00%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.879e-01	1.0000	23.0	3.23%	1630.6	3.49%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-3.737e-01	1.0000	32.0	4.49%	2254.5	4.83%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-3.683e-01	1.0000	24.0	3.37%	1712.0	3.67%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-3.594e-01	1.0000	8.0	1.12%	601.8	1.29%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-3.479e-01	1.0000	27.0	3.79%	1931.2	4.14%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-3.307e-01	1.0000	39.0	5.47%	2766.2	5.92%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.243e-01	1.0000	1.0	0.14%	84.7	0.18%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.243e-01	1.0000	1.0	0.14%	84.1	0.18%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-3.184e-01	1.0000	3.0	0.42%	248.0	0.53%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-3.108e-01	1.0000	32.0	4.49%	2304.3	4.94%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-3.042e-01	1.0000	85.0	11.92%	5908.9	12.66%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.007e-01	1.0000	16.0	2.24%	1199.1	2.57%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.912e-01	1.0000	1.0	0.14%	90.6	0.19%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-2.908e-01	1.0000	19.0	2.66%	1417.4	3.04%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.771e-01	1.0000	2.0	0.28%	179.8	0.39%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.735e-01	1.0000	24.0	3.37%	1781.3	3.82%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.689e-01	1.0000	61.0	8.56%	4331.7	9.28%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.482e-01	1.0000	83.0	11.64%	5853.3	12.54%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.473e-01	1.0000	6.0	0.84%	504.5	1.08%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.436e-01	1.0000	2.0	0.28%	189.2	0.41%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.402e-01	1.0000	1.0	0.14%	102.0	0.22%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.399e-01	1.0000	4.0	0.56%	353.4	0.76%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.383e-01	1.0000	42.0	5.89%	3067.6	6.57%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.382e-01	1.0000	22.0	3.09%	1671.6	3.58%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-2.357e-01	1.0000	31.0	4.35%	2306.9	4.94%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.350e-01	1.0000	16.0	2.24%	1247.0	2.67%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.264e-01	1.0000	4.0	0.56%	359.9	0.77%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.242e-01	1.0000	4.0	0.56%	360.7	0.77%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.237e-01	1.0000	32.0	4.49%	2389.5	5.12%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.190e-01	1.0000	30.0	4.21%	2255.0	4.83%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.181e-01	1.0000	7.0	0.98%	596.6	1.28%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.136e-01	1.0000	17.0	2.38%	1336.4	2.86%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.131e-01	1.0000	7.0	0.98%	599.8	1.28%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.031e-01	1.0000	80.0	11.22%	5724.1	12.26%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.015e-01	1.0000	17.0	2.38%	1347.7	2.89%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.906e-01	1.0000	38.0	5.33%	2851.0	6.11%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.865e-01	1.0000	24.0	3.37%	1866.8	4.00%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.861e-01	1.0000	10.0	1.40%	846.0	1.81%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.825e-01	1.0000	6.0	0.84%	541.9	1.16%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.810e-01	1.0000	4.0	0.56%	382.0	0.82%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.724e-01	1.0000	35.0	4.91%	2665.0	5.71%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.715e-01	1.0000	17.0	2.38%	1377.4	2.95%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.600e-01	1.0000	1.0	0.14%	125.0	0.27%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.549e-01	1.0000	8.0	1.12%	718.8	1.54%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.535e-01	1.0000	30.0	4.21%	2338.7	5.01%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.470e-01	1.0000	86.0	12.06%	6249.6	13.39%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.289e-01	1.0000	27.0	3.79%	2161.0	4.63%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.278e-01	1.0000	49.0	6.87%	3729.3	7.99%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.250e-01	1.0000	1.0	0.14%	140.9	0.30%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.230e-01	1.0000	4.0	0.56%	421.4	0.90%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.223e-01	1.0000	21.0	2.95%	1734.3	3.71%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.191e-01	1.0000	39.0	5.47%	3040.9	6.51%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.113e-01	1.0000	18.0	2.52%	1529.0	3.27%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.098e-01	1.0000	1.0	0.14%	148.9	0.32%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.077e-01	1.0000	6.0	0.84%	603.1	1.29%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.062e-01	1.0000	3.0	0.42%	347.8	0.74%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.048e-01	1.0000	36.0	5.05%	2856.3	6.12%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.047e-01	1.0000	4.0	0.56%	437.5	0.94%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.015e-01	1.0000	5.0	0.70%	526.4	1.13%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.804e-02	1.0000	1.0	0.14%	155.0	0.33%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.804e-02	1.0000	1.0	0.14%	155.0	0.33%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-9.360e-02	1.0000	4.0	0.56%	448.3	0.96%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-9.266e-02	1.0000	4.0	0.56%	449.8	0.96%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-9.227e-02	1.0000	13.0	1.82%	1180.3	2.53%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-9.041e-02	1.0000	10.0	1.40%	948.5	2.03%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-8.896e-02	1.0000	5.0	0.70%	540.7	1.16%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-8.459e-02	1.0000	9.0	1.26%	877.2	1.88%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-8.142e-02	1.0000	9.0	1.26%	882.2	1.89%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-8.112e-02	1.0000	4.0	0.56%	462.9	0.99%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-7.879e-02	1.0000	24.0	3.37%	2040.7	4.37%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-7.235e-02	1.0000	1.0	0.14%	174.8	0.37%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-7.233e-02	1.0000	6.0	0.84%	649.0	1.39%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-7.163e-02	1.0000	22.0	3.09%	1908.6	4.09%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.383e-02	1.0000	2.0	0.28%	293.2	0.63%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.186e-02	1.0000	5.0	0.70%	578.8	1.24%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-6.095e-02	1.0000	16.0	2.24%	1477.3	3.16%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-5.901e-02	1.0000	27.0	3.79%	2319.7	4.97%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.571e-02	1.0000	26.0	3.65%	2255.7	4.83%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-4.764e-02	1.0000	13.0	1.82%	1277.0	2.74%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.759e-02	1.0000	33.0	4.63%	2808.3	6.01%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-4.733e-02	1.0000	2.0	0.28%	317.0	0.68%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.299e-02	1.0000	1.0	0.14%	207.5	0.44%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-4.244e-02	1.0000	22.0	3.09%	2000.3	4.28%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.235e-02	1.0000	43.0	6.03%	3569.8	7.65%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.971e-02	1.0000	55.0	7.71%	4455.1	9.54%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-3.935e-02	1.0000	4.0	0.56%	531.1	1.14%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.853e-02	1.0000	1.0	0.14%	215.0	0.46%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.578e-02	1.0000	3.0	0.42%	442.3	0.95%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-3.535e-02	1.0000	4.0	0.56%	541.7	1.16%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.032e-02	1.0000	5.0	0.70%	650.3	1.39%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.928e-02	1.0000	17.0	2.38%	1668.7	3.57%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.848e-02	1.0000	32.0	4.49%	2833.9	6.07%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.423e-02	1.0000	2.0	0.28%	367.6	0.79%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.923e-02	1.0000	46.0	6.45%	3958.5	8.48%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.720e-02	1.0000	6.0	0.84%	800.8	1.72%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.578e-02	1.0000	13.0	1.82%	1426.9	3.06%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.557e-02	1.0000	3.0	0.42%	513.0	1.10%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.332e-02	1.0000	2.0	0.28%	412.4	0.88%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.267e-02	1.0000	3.0	0.42%	529.2	1.13%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-5.304e-03	1.0000	1.0	0.14%	342.8	0.73%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-5.303e-03	1.0000	4.0	0.56%	710.4	1.52%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.864e-03	1.0000	4.0	0.56%	737.9	1.58%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.874e-03	1.0000	2.0	0.28%	556.7	1.19%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.873e-03	1.0000	66.0	9.26%	5912.0	12.66%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.169e-03	1.0000	2.0	0.28%	590.0	1.26%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.118e-03	1.0000	13.0	1.82%	1739.6	3.73%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	38.8	0.08%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	42.5	0.09%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	27.1	0.06%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	0.000e+00	1.0000	0.0	0.00%	87.8	0.19%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	8.3	0.02%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	0.000e+00	1.0000	0.0	0.00%	98.3	0.21%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	0.000e+00	1.0000	0.0	0.00%	251.3	0.54%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	138.9	0.30%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	33.6	0.07%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	19.4	0.04%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	75.7	0.16%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	0.000e+00	1.0000	0.0	0.00%	196.1	0.42%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	11.4	0.02%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	5.0	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	11.4	0.02%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	47.4	0.10%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	30.0	0.06%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	8.2	0.02%