Information for 16-CMKGGYRAWTTAYCAT (Motif 27)

A T G C G T C A A C G T A C T G A C T G A G C T C T G A C G T A C G A T A C G T A G C T C G T A A G T C A G T C C G T A A C G T
Reverse Opposite:
G T C A A C G T A C T G C T A G A C G T C T G A C G T A C G T A A C G T A G C T C T G A A G T C A G T C G T C A A C G T A T C G
p-value:1e-6
log p-value:-1.435e+01
Information Content per bp:1.847
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.0 +/- 23.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CMKGGYRAWTTAYCAT-
-----BTVATTWGCATA
 A T G C G T C A A C G T A C T G A C T G A G C T C T G A C G T A C G A T A C G T A G C T C G T A A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

POU3F3/MA0788.1/Jaspar

Match Rank:2
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CMKGGYRAWTTAYCAT---
------AAATTAGCATAAT
 A T G C G T C A A C G T A C T G A C T G A G C T C T G A C G T A C G A T A C G T A G C T C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CMKGGYRAWTTAYCAT
---RGCCATYAATCA-
 A T G C G T C A A C G T A C T G A C T G A G C T C T G A C G T A C G A T A C G T A G C T C G T A A G T C A G T C C G T A A C G T
A C G T A C G T A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

PB0064.1_Sox14_1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CMKGGYRAWTTAYCAT----
----GCTAATTATAATTATC
 A T G C G T C A A C G T A C T G A C T G A G C T C T G A C G T A C G A T A C G T A G C T C G T A A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

POU3F1/MA0786.1/Jaspar

Match Rank:5
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CMKGGYRAWTTAYCAT--
------TAATTTGCATAA
 A T G C G T C A A C G T A C T G A C T G A G C T C T G A C G T A C G A T A C G T A G C T C G T A A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:6
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CMKGGYRAWTTAYCAT--
------TAATTTGCATAA
 A T G C G T C A A C G T A C T G A C T G A G C T C T G A C G T A C G A T A C G T A G C T C G T A A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A

PH0052.1_Hoxa5/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CMKGGYRAWTTAYCAT
NTGAGCTAATTACCNT
 A T G C G T C A A C G T A C T G A C T G A G C T C T G A C G T A C G A T A C G T A G C T C G T A A G T C A G T C C G T A A C G T
G A T C G C A T C A T G C G T A C T A G A T G C G A C T G T C A G T C A A C G T A C G T C T G A T G A C G A T C A C T G A G C T

NFAT5/MA0606.1/Jaspar

Match Rank:8
Score:0.57
Offset:7
Orientation:forward strand
Alignment:CMKGGYRAWTTAYCAT-
-------ATTTTCCATT
 A T G C G T C A A C G T A C T G A C T G A G C T C T G A C G T A C G A T A C G T A G C T C G T A A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T

PH0174.1_Vax1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CMKGGYRAWTTAYCAT
CTNNGNTAATTAACNT
 A T G C G T C A A C G T A C T G A C T G A G C T C T G A C G T A C G A T A C G T A G C T C G T A A G T C A G T C C G T A A C G T
G A T C G C A T C T A G C T A G T C A G A G C T G A C T G T C A G C T A C G A T C A G T C T G A C G T A A G T C A T C G A C G T

PH0049.1_Hoxa2/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CMKGGYRAWTTAYCAT
NTGAGCTAATTACCNT
 A T G C G T C A A C G T A C T G A C T G A G C T C T G A C G T A C G A T A C G T A G C T C G T A A G T C A G T C C G T A A C G T
G C T A G C A T C A T G C T G A C T A G A T G C G A C T T G C A G T C A A C G T A C G T C T G A T A G C G A T C A C G T G A C T