Information for 12-TGATGCCCTCTAG (Motif 23)

A C G T A T C G C T G A C A G T A C T G G T A C G T A C G A T C G C A T A T G C A G C T C G T A A C T G
Reverse Opposite:
T A G C G C A T C T G A A T C G C G T A C A T G A C T G A C T G G T A C G T C A A G C T T A G C G T C A
p-value:1e-7
log p-value:-1.751e+01
Information Content per bp:1.681
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif90.2
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets44.7 +/- 30.5bp
Average Position of motif in Background54.1 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six3/MA0631.1/Jaspar

Match Rank:1
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCCCTCTAG
ANANGTGATACCCTATN-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A C A G T A C T G G T A C G T A C G A T C G C A T A T G C A G C T C G T A A C T G
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C A C G T

PH0163.1_Six3/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCCCTCTAG
ANANGTGATACCCTATN-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A C A G T A C T G G T A C G T A C G A T C G C A T A T G C A G C T C G T A A C T G
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C A C G T

PH0165.1_Six6_1/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCCCTCTAG
ANANNTGATACCCTATN-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A C A G T A C T G G T A C G T A C G A T C G C A T A T G C A G C T C G T A A C T G
T G C A C G A T C G T A G C T A C A G T G C A T C A T G C G T A A G C T G T C A A G T C T A G C A G T C A G C T G C T A C G A T G A C T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TGATGCCCTCTAG
---TGACCYCT--
 A C G T A T C G C T G A C A G T A C T G G T A C G T A C G A T C G C A T A T G C A G C T C G T A A C T G
A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T

PB0059.1_Six6_1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCCCTCTAG
ANANNTGATACCCNATN-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A C A G T A C T G G T A C G T A C G A T C G C A T A T G C A G C T C G T A A C T G
C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T A C G T

PH0162.1_Six2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCCCTCTAG
ANANGTGATACCCCATT-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A C A G T A C T G G T A C G T A C G A T C G C A T A T G C A G C T C G T A A C T G
G T C A C T G A C G T A G T A C C T A G A G C T C A T G C G T A A G C T G T C A A G T C T G A C A G T C A G T C G T C A C G A T G A C T A C G T

PH0166.1_Six6_2/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCCCTCTAG
AATNTTGATACCCTATN-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A C A G T A C T G G T A C G T A C G A T C G C A T A T G C A G C T C G T A A C T G
T G C A C T G A C G A T C T G A C G A T C G A T C A T G C G T A G A C T G T C A A G T C G A T C G A T C A G C T G C T A G C A T G A C T A C G T

PH0161.1_Six1/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCCCTCTAG
ANNNATGATACCCCATC-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A C A G T A C T G G T A C G T A C G A T C G C A T A T G C A G C T C G T A A C T G
G T C A T G C A C G T A G T C A C T G A G A C T C A T G C G T A A G C T G T C A A G T C A T G C A G T C A G T C G C T A C G A T G A T C A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TGATGCCCTCTAG
--ATGCCCACC--
 A C G T A T C G C T G A C A G T A C T G G T A C G T A C G A T C G C A T A T G C A G C T C G T A A C T G
A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCCCTCTAG
NNAATTAATGACCNNN--
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A C A G T A C T G G T A C G T A C G A T C G C A T A T G C A G C T C G T A A C T G
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C A C G T A C G T