Information for 13-GTYCTCCTCTGCTAAA (Motif 17)

A T C G C A G T A G C T A G T C A C G T A T G C A G T C A C G T G T A C A C G T A C T G A G T C C A G T G C T A C G T A C T G A
Reverse Opposite:
A G C T C G A T C G A T G C T A C T A G A G T C C G T A A C T G G T C A T A C G A T C G C G T A C T A G C T G A G C T A A T G C
p-value:1e-9
log p-value:-2.227e+01
Information Content per bp:1.757
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.0 +/- 22.1bp
Average Position of motif in Background87.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.51
Offset:7
Orientation:forward strand
Alignment:GTYCTCCTCTGCTAAA-
-------GGTGCCAAGT
 A T C G C A G T A G C T A G T C A C G T A T G C A G T C A C G T G T A C A C G T A C T G A G T C C A G T G C T A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GTYCTCCTCTGCTAAA
--VBSYGTCTGG----
 A T C G C A G T A G C T A G T C A C G T A T G C A G T C A C G T G T A C A C G T A C T G A G T C C A G T G C T A C G T A C T G A
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GTYCTCCTCTGCTAAA
-----CAGCTGNT---
 A T C G C A G T A G C T A G T C A C G T A T G C A G T C A C G T G T A C A C G T A C T G A G T C C A G T G C T A C G T A C T G A
A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GTYCTCCTCTGCTAAA
-----GGTCTGGCAT-
 A T C G C A G T A G C T A G T C A C G T A T G C A G T C A C G T G T A C A C G T A C T G A G T C C A G T G C T A C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T

SPIB/MA0081.1/Jaspar

Match Rank:5
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:GTYCTCCTCTGCTAAA
---TTCCTCT------
 A T C G C A G T A G C T A G T C A C G T A T G C A G T C A C G T G T A C A C G T A C T G A G T C C A G T G C T A C G T A C T G A
A C G T A C G T A C G T C G A T C G A T G A T C A G T C A C G T A T G C C G A T A C G T A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:6
Score:0.49
Offset:3
Orientation:forward strand
Alignment:GTYCTCCTCTGCTAAA
---CGCAGCTGCG---
 A T C G C A G T A G C T A G T C A C G T A T G C A G T C A C G T G T A C A C G T A C T G A G T C C A G T G C T A C G T A C T G A
A C G T A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.49
Offset:7
Orientation:forward strand
Alignment:GTYCTCCTCTGCTAAA
-------GCTTCC---
 A T C G C A G T A G C T A G T C A C G T A T G C A G T C A C G T G T A C A C G T A C T G A G T C C A G T G C T A C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:8
Score:0.48
Offset:7
Orientation:forward strand
Alignment:GTYCTCCTCTGCTAAA
-------TATGCAAAT
 A T C G C A G T A G C T A G T C A C G T A T G C A G T C A C G T G T A C A C G T A C T G A G T C C A G T G C T A C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.48
Offset:8
Orientation:forward strand
Alignment:GTYCTCCTCTGCTAAA
--------TTGCCAAG
 A T C G C A G T A G C T A G T C A C G T A T G C A G T C A C G T G T A C A C G T A C T G A G T C C A G T G C T A C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.48
Offset:7
Orientation:forward strand
Alignment:GTYCTCCTCTGCTAAA
-------GCTGTG---
 A T C G C A G T A G C T A G T C A C G T A T G C A G T C A C G T G T A C A C G T A C T G A G T C C A G T G C T A C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T