Information for 5-HTMCHCCTGVTGG (Motif 3)

G C A T C A G T G T A C A G T C G T A C A G T C T A G C C G A T T C A G T C G A A C G T A C T G A T C G
Reverse Opposite:
A T G C G T A C G T C A A G C T A G T C C G T A A C T G T C A G C A T G C T A G A C T G G T C A C G T A
p-value:1e-15
log p-value:-3.492e+01
Information Content per bp:1.643
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.86%
Number of Background Sequences with motif105.3
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets56.0 +/- 25.7bp
Average Position of motif in Background53.3 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---HTMCHCCTGVTGG---
TAGCGCCCCCTGGTGGCCA
A C G T A C G T A C G T G C A T C A G T G T A C A G T C G T A C A G T C T A G C C G A T T C A G T C G A A C G T A C T G A T C G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.78
Offset:-6
Orientation:forward strand
Alignment:------HTMCHCCTGVTGG-
CNNBRGCGCCCCCTGSTGGC
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A G T G T A C A G T C G T A C A G T C T A G C C G A T T C A G T C G A A C G T A C T G A T C G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----HTMCHCCTGVTGG---
ANAGTGCCACCTGGTGGCCA
A C G T A C G T A C G T A C G T G C A T C A G T G T A C A G T C G T A C A G T C T A G C C G A T T C A G T C G A A C G T A C T G A T C G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

FIGLA/MA0820.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:HTMCHCCTGVTGG
-ACCACCTGTT--
G C A T C A G T G T A C A G T C G T A C A G T C T A G C C G A T T C A G T C G A A C G T A C T G A T C G
A C G T G C T A G T A C A G T C G T C A A T G C T A G C C G A T C A T G A C G T C G A T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:HTMCHCCTGVTGG
-NNCACCTGNN--
G C A T C A G T G T A C A G T C G T A C A G T C T A G C C G A T T C A G T C G A A C G T A C T G A T C G
A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T

TCF3/MA0522.2/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:HTMCHCCTGVTGG
-AACACCTGCT--
G C A T C A G T G T A C A G T C G T A C A G T C T A G C C G A T T C A G T C G A A C G T A C T G A T C G
A C G T G T C A T C G A A G T C G C T A A T G C A T G C G C A T T C A G A G T C C A G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:HTMCHCCTGVTGG-
--CCCCCTGCTGTG
G C A T C A G T G T A C A G T C G T A C A G T C T A G C C G A T T C A G T C G A A C G T A C T G A T C G A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

TCF4/MA0830.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:HTMCHCCTGVTGG
-CGCACCTGCT--
G C A T C A G T G T A C A G T C G T A C A G T C T A G C C G A T T C A G T C G A A C G T A C T G A T C G
A C G T G A T C T C A G G A T C C G T A A T G C T A G C C G A T C T A G A T G C C G A T A C G T A C G T

ID4/MA0824.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:HTMCHCCTGVTGG
-TACACCTGTC--
G C A T C A G T G T A C A G T C G T A C A G T C T A G C C G A T T C A G T C G A A C G T A C T G A T C G
A C G T C A G T T C G A A G T C C T G A A T G C T A G C C G A T T C A G A G C T G A T C A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:HTMCHCCTGVTGG
TTCCCCCTAC---
G C A T C A G T G T A C A G T C G T A C A G T C T A G C C G A T T C A G T C G A A C G T A C T G A T C G
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T A C G T