Information for 5-YTCCCTCTAGTGGVAA (Motif 3)

A G T C A C G T G T A C A G T C G T A C A G C T G T A C A C G T C G T A A T C G C A G T A C T G C T A G T A G C G T C A G T C A
Reverse Opposite:
C A G T C A G T A C T G A G T C A G T C G C T A A T G C G C A T C G T A C A T G C T G A A C T G C T A G A C T G G T C A T C A G
p-value:1e-18
log p-value:-4.220e+01
Information Content per bp:1.705
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif10.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.5 +/- 20.7bp
Average Position of motif in Background51.1 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----YTCCCTCTAGTGGVAA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C A C G T G T A C A G T C G T A C A G C T G T A C A C G T C G T A A T C G C A G T A C T G C T A G T A G C G T C A G T C A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---YTCCCTCTAGTGGVAA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C A C G T G T A C A G T C G T A C A G C T G T A C A C G T C G T A A T C G C A G T A C T G C T A G T A G C G T C A G T C A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.75
Offset:-6
Orientation:forward strand
Alignment:------YTCCCTCTAGTGGVAA
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T G T A C A G T C G T A C A G C T G T A C A C G T C G T A A T C G C A G T A C T G C T A G T A G C G T C A G T C A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:YTCCCTCTAGTGGVAA
TTCCCCCTAC------
 A G T C A C G T G T A C A G T C G T A C A G C T G T A C A C G T C G T A A T C G C A G T A C T G C T A G T A G C G T C A G T C A
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:YTCCCTCTAGTGGVAA
CACCCCCGGGGGGG--
 A G T C A C G T G T A C A G T C G T A C A G C T G T A C A C G T C G T A A T C G C A G T A C T G C T A G T A G C G T C A G T C A
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--YTCCCTCTAGTGGVAA
NYTTCCCGCC--------
 A C G T A C G T A G T C A C G T G T A C A G T C G T A C A G C T G T A C A C G T C G T A A T C G C A G T A C T G C T A G T A G C G T C A G T C A
T A G C A G C T G A C T A G C T A T G C T G A C T A G C C A T G A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--YTCCCTCTAGTGGVAA
NCTTCCCGCCC-------
 A C G T A C G T A G T C A C G T G T A C A G T C G T A C A G C T G T A C A C G T C G T A A T C G C A G T A C T G C T A G T A G C G T C A G T C A
A G T C A G T C A G C T A C G T A T G C A G T C A G T C C A T G A G T C A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:YTCCCTCTAGTGGVAA
CCCCCCCGGGGGGGT-
 A G T C A C G T G T A C A G T C G T A C A G C T G T A C A C G T C G T A A T C G C A G T A C T G C T A G T A G C G T C A G T C A
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:YTCCCTCTAGTGGVAA
CCCCCCCGGGGGGGT-
 A G T C A C G T G T A C A G T C G T A C A G C T G T A C A C G T C G T A A T C G C A G T A C T G C T A G T A G C G T C A G T C A
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:YTCCCTCTAGTGGVAA
---TCCCNNGGGACN-
 A G T C A C G T G T A C A G T C G T A C A G C T G T A C A C G T C G T A A T C G C A G T A C T G C T A G T A G C G T C A G T C A
A C G T A C G T A C G T G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C A C G T