Information for 8-AATAAACCCAAGG (Motif 19)

C G T A C G T A A C G T C G T A G T C A C G T A A G T C A G T C G T A C C G T A C G T A A C T G A C T G
Reverse Opposite:
G T A C A G T C A C G T A C G T C A T G A C T G A C T G A C G T A C G T C G A T C G T A A C G T A C G T
p-value:1e-10
log p-value:-2.485e+01
Information Content per bp:1.939
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.0 +/- 25.0bp
Average Position of motif in Background56.4 +/- 13.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.1/Jaspar

Match Rank:1
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AATAAACCCAAGG
CCAATAAAAA-----
 A C G T A C G T C G T A C G T A A C G T C G T A G T C A C G T A A G T C A G T C G T A C C G T A C G T A A C T G A C T G
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AATAAACCCAAGG
GCAATAAAA------
 A C G T A C G T C G T A C G T A A C G T C G T A G T C A C G T A A G T C A G T C G T A C C G T A C G T A A C T G A C T G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AATAAACCCAAGG
CCAATAAAAC-----
 A C G T A C G T C G T A C G T A A C G T C G T A G T C A C G T A A G T C A G T C G T A C C G T A C G T A A C T G A C T G
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AATAAACCCAAGG-
AAAGTAAACAAAAATT
 A C G T A C G T C G T A C G T A A C G T C G T A G T C A C G T A A G T C A G T C G T A C C G T A C G T A A C T G A C T G A C G T
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

Hoxd3/MA0912.1/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----AATAAACCCAAGG
ANGNTAATTANCNCAN--
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A G T C A C G T A A G T C A G T C G T A C C G T A C G T A A C T G A C T G
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A A C G T A C G T

PH0079.1_Hoxd3/Jaspar

Match Rank:6
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----AATAAACCCAAGG
ANGNTAATTANCNCAN--
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A G T C A C G T A A G T C A G T C G T A C C G T A C G T A A C T G A C T G
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AATAAACCCAAGG
GGTAATAAAAA-----
 A C G T A C G T A C G T C G T A C G T A A C G T C G T A G T C A C G T A A G T C A G T C G T A C C G T A C G T A A C T G A C T G
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AATAAACCCAAGG
CCAATAAAAA-----
 A C G T A C G T C G T A C G T A A C G T C G T A G T C A C G T A A G T C A G T C G T A C C G T A C G T A A C T G A C T G
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AATAAACCCAAGG
NGYCATAAAWCH----
 A C G T A C G T A C G T C G T A C G T A A C G T C G T A G T C A C G T A A G T C A G T C G T A C C G T A C G T A A C T G A C T G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AATAAACCCAAGG
GTCATAAAAN-----
 A C G T A C G T C G T A C G T A A C G T C G T A G T C A C G T A A G T C A G T C G T A C C G T A C G T A A C T G A C T G
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T