Information for 21-ACTGTGTTATGCA (Motif 23)

C G T A T A G C A C G T A C T G A C G T A T C G A C G T C G A T C G T A A C G T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C G T C A A C G T C G T A C G T A A T G C C G T A A G T C C G T A A C T G A C G T
p-value:1e-8
log p-value:-1.876e+01
Information Content per bp:1.922
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.0 +/- 22.8bp
Average Position of motif in Background49.3 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ACTGTGTTATGCA---
-CTTTGTTATGCAAAT
 C G T A T A G C A C G T A C T G A C G T A T C G A C G T C G A T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:ACTGTGTTATGCA-
--TGAATTATGCAT
 C G T A T A G C A C G T A C T G A C G T A T C G A C G T C G A T C G T A A C G T A C T G A G T C C G T A A C G T
A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ACTGTGTTATGCA------
--TNNATTATGCATANNTT
 C G T A T A G C A C G T A C T G A C G T A T C G A C G T C G A T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ACTGTGTTATGCA---
-CATTGTTATGCAAAT
 C G T A T A G C A C G T A C T G A C G T A T C G A C G T C G A T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:5
Score:0.62
Offset:5
Orientation:forward strand
Alignment:ACTGTGTTATGCA--
-----RTTATGYAAB
 C G T A T A G C A C G T A C T G A C G T A T C G A C G T C G A T C G T A A C G T A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C

CEBPA/MA0102.3/Jaspar

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:ACTGTGTTATGCA--
----NATTGTGCAAT
 C G T A T A G C A C G T A C T G A C G T A T C G A C G T C G A T C G T A A C G T A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ACTGTGTTATGCA---
-ATGCATWATGCATRW
 C G T A T A G C A C G T A C T G A C G T A T C G A C G T C G A T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

PB0121.1_Foxj3_2/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-ACTGTGTTATGCA---
NNCTTTGTTTTGNTNNN
 A C G T C G T A T A G C A C G T A C T G A C G T A T C G A C G T C G A T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ACTGTGTTATGCA---
-ATGAATWATTCATGA
 C G T A T A G C A C G T A C T G A C G T A T C G A C G T C G A T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:ACTGTGTTATGCA---
------TTATGCAAAT
 C G T A T A G C A C G T A C T G A C G T A T C G A C G T C G A T C G T A A C G T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T