Information for 8-RCAAGGAWAAWSA (Motif 9)

C T G A A G T C C T G A C G T A A C T G A C T G C G T A C G A T C G T A C T G A C G T A A T G C C G T A
Reverse Opposite:
A C G T A T C G C G A T A G C T A C G T C G T A A C G T A G T C A G T C C G A T A G C T A C T G A G C T
p-value:1e-13
log p-value:-3.042e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.2 +/- 26.6bp
Average Position of motif in Background55.5 +/- 11.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:RCAAGGAWAAWSA
-CAAGGHCANV--
 C T G A A G T C C T G A C G T A A C T G A C T G C G T A C G A T C G T A C T G A C G T A A T G C C G T A
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:RCAAGGAWAAWSA
---TGGAAAA---
 C T G A A G T C C T G A C G T A A C T G A C T G C G T A C G A T C G T A C T G A C G T A A T G C C G T A
A C G T A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:RCAAGGAWAAWSA
-NATGGAAAAN--
 C T G A A G T C C T G A C G T A A C T G A C T G C G T A C G A T C G T A C T G A C G T A A T G C C G T A
A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:RCAAGGAWAAWSA
-AATGGAAAAT--
 C T G A A G T C C T G A C G T A A C T G A C T G C G T A C G A T C G T A C T G A C G T A A T G C C G T A
A C G T C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:RCAAGGAWAAWSA
--AAGGATATNTN
 C T G A A G T C C T G A C G T A A C T G A C T G C G T A C G A T C G T A C T G A C G T A A T G C C G T A
A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-RCAAGGAWAAWSA
BTCAAGGTCA----
 A C G T C T G A A G T C C T G A C G T A A C T G A C T G C G T A C G A T C G T A C T G A C G T A A T G C C G T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:RCAAGGAWAAWSA
-AATGGAAAAT--
 C T G A A G T C C T G A C G T A A C T G A C T G C G T A C G A T C G T A C T G A C G T A A T G C C G T A
A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:RCAAGGAWAAWSA
-NNTGGAAANN--
 C T G A A G T C C T G A C G T A A C T G A C T G C G T A C G A T C G T A C T G A C G T A A T G C C G T A
A C G T C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T

FOXF2/MA0030.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:RCAAGGAWAAWSA--
-CAAACGTAAACAAT
 C T G A A G T C C T G A C G T A A C T G A C T G C G T A C G A T C G T A C T G A C G T A A T G C C G T A A C G T A C G T
A C G T A G T C G T C A G C T A C G T A T A G C C T A G A C G T C G T A C G T A C G T A A G T C C G T A G C T A C G A T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-RCAAGGAWAAWSA
NTCAAGGTCA----
 A C G T C T G A A G T C C T G A C G T A A C T G A C T G C G T A C G A T C G T A C T G A C G T A A T G C C G T A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T