Information for 3-VTGCCMTCTRGTGGCA (Motif 5)

T G A C A C G T A C T G G A T C A G T C G T A C G A C T A T G C G A C T C T A G C T A G C A G T A C T G C T A G A G T C G C T A
Reverse Opposite:
C A G T C T A G A G T C A G T C G T C A A G T C G A T C C G T A A T C G C T G A C A T G C T A G C T A G G T A C C G T A A C G T
p-value:1e-18
log p-value:-4.240e+01
Information Content per bp:1.701
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.6 +/- 25.5bp
Average Position of motif in Background59.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---VTGCCMTCTRGTGGCA-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T T G A C A C G T A C T G G A T C A G T C G T A C G A C T A T G C G A C T C T A G C T A G C A G T A C T G C T A G A G T C G C T A A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--VTGCCMTCTRGTGGCA-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T T G A C A C G T A C T G G A T C A G T C G T A C G A C T A T G C G A C T C T A G C T A G C A G T A C T G C T A G A G T C G C T A A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----VTGCCMTCTRGTGGCA
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T T G A C A C G T A C T G G A T C A G T C G T A C G A C T A T G C G A C T C T A G C T A G C A G T A C T G C T A G A G T C G C T A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:VTGCCMTCTRGTGGCA
-TGWCCTCARNTGACC
 T G A C A C G T A C T G G A T C A G T C G T A C G A C T A T G C G A C T C T A G C T A G C A G T A C T G C T A G A G T C G C T A
A C G T G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:VTGCCMTCTRGTGGCA----
-TGACCTAAAGTAACCTCTG
 T G A C A C G T A C T G G A T C A G T C G T A C G A C T A T G C G A C T C T A G C T A G C A G T A C T G C T A G A G T C G C T A A C G T A C G T A C G T A C G T
A C G T A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:VTGCCMTCTRGTGGCA--
-TGACCTTTCGTGACCTT
 T G A C A C G T A C T G G A T C A G T C G T A C G A C T A T G C G A C T C T A G C T A G C A G T A C T G C T A G A G T C G C T A A C G T A C G T
A C G T A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:VTGCCMTCTRGTGGCA
NTGCCCANNGGTNA--
 T G A C A C G T A C T G G A T C A G T C G T A C G A C T A T G C G A C T C T A G C T A G C A G T A C T G C T A G A G T C G C T A
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:VTGCCMTCTRGTGGCA
ATGCCAACC-------
 T G A C A C G T A C T G G A T C A G T C G T A C G A C T A T G C G A C T C T A G C T A G C A G T A C T G C T A G A G T C G C T A
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:VTGCCMTCTRGTGGCA-
-TGACCTNTAGTAACCC
 T G A C A C G T A C T G G A T C A G T C G T A C G A C T A T G C G A C T C T A G C T A G C A G T A C T G C T A G A G T C G C T A A C G T
A C G T G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:VTGCCMTCTRGTGGCA
-TGTCANYT-------
 T G A C A C G T A C T G G A T C A G T C G T A C G A C T A T G C G A C T C T A G C T A G C A G T A C T G C T A G A G T C G C T A
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T