Information for 10-CCCACTAGAT (Motif 13)

T G A C A G T C A G T C G T C A A G T C A G C T G C T A A C T G G T C A C G A T
Reverse Opposite:
C G T A A C G T A G T C C A G T C T G A A C T G A C G T A C T G A C T G A C T G
p-value:1e-11
log p-value:-2.569e+01
Information Content per bp:1.856
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif13.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets42.9 +/- 30.7bp
Average Position of motif in Background45.2 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-8/MA0673.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CCCACTAGAT
-CCACTTGAA
 T G A C A G T C A G T C G T C A A G T C A G C T G C T A A C T G G T C A C G A T
A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

PH0111.1_Nkx2-2/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCCACTAGAT----
ATAACCACTTGAAAATT
 A C G T A C G T A C G T T G A C A G T C A G T C G T C A A G T C A G C T G C T A A C T G G T C A C G A T A C G T A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

PH0171.1_Nkx2-1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCCACTAGAT---
TAAGCCACTTGAAATT
 A C G T A C G T A C G T T G A C A G T C A G T C G T C A A G T C A G C T G C T A A C T G G T C A C G A T A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

NKX2-3/MA0672.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCCACTAGAT
ACCACTTGAA
 T G A C A G T C A G T C G T C A A G T C A G C T G C T A A C T G G T C A C G A T
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CCCACTAGAT
NSCACTYVAV
 T G A C A G T C A G T C G T C A A G T C A G C T G C T A A C T G G T C A C G A T
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

PH0113.1_Nkx2-4/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCCACTAGAT---
TAAGCCACTTGAAATT
 A C G T A C G T A C G T T G A C A G T C A G T C G T C A A G T C A G C T G C T A A C T G G T C A C G A T A C G T A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

PH0114.1_Nkx2-5/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCCACTAGAT---
TAAGCCACTTGAATTT
 A C G T A C G T A C G T T G A C A G T C A G T C G T C A A G T C A G C T G C T A A C T G G T C A C G A T A C G T A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CCCACTAGAT-
NNAGTCCCACTCNNNN
 A C G T A C G T A C G T A C G T A C G T T G A C A G T C A G T C G T C A A G T C A G C T G C T A A C T G G T C A C G A T A C G T
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCCACTAGAT
MRSCACTYAA-
 A C G T T G A C A G T C A G T C G T C A A G T C A G C T G C T A A C T G G T C A C G A T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCCACTAGAT--------
TGGCCACCAGGTGGCACTNT
 A C G T A C G T T G A C A G T C A G T C G T C A A G T C A G C T G C T A A C T G G T C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T