Information for 3-AAGTWAAWGTTTAACT (Motif 6)

G T C A T C G A T A C G A C G T G C A T C G T A G T C A C G T A A T C G A C G T G A C T A C G T G T C A C G T A A T G C C G A T
Reverse Opposite:
C G T A T A C G G C A T A C G T C G T A C T G A T C G A A T G C G C A T A C G T G A C T C G T A G T C A A T G C A C G T C A G T
p-value:1e-12
log p-value:-2.831e+01
Information Content per bp:1.676
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif23.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets55.4 +/- 25.3bp
Average Position of motif in Background40.3 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:1
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:AAGTWAAWGTTTAACT
---TTAATGTTTAACC
 G T C A T C G A T A C G A C G T G C A T C G T A G T C A C G T A A T C G A C G T G A C T A C G T G T C A C G T A A T G C C G A T
A C G T A C G T A C G T A C G T G C A T C T G A G T C A G C A T T A C G C G A T C A G T G A C T G C T A C G T A G A T C G A T C

HNF1A/MA0046.2/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AAGTWAAWGTTTAACT
-AGTTAATGATTAACT
 G T C A T C G A T A C G A C G T G C A T C G T A G T C A C G T A A T C G A C G T G A C T A C G T G T C A C G T A A T G C C G A T
A C G T C T G A C T A G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C G T A T C G A G T A C G C A T

HNF1B/MA0153.2/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AAGTWAAWGTTTAACT
--GTTAATNATTAAC-
 G T C A T C G A T A C G A C G T G C A T C G T A G T C A C G T A A T C G A C G T G A C T A C G T G T C A C G T A A T G C C G A T
A C G T A C G T C T A G A G C T G A C T C T G A G T C A G C A T A T G C C G T A C A G T G A C T C G T A T C G A G T A C A C G T

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AAGTWAAWGTTTAACT
---TTAATNATTAAC-
 G T C A T C G A T A C G A C G T G C A T C G T A G T C A C G T A A T C G A C G T G A C T A C G T G T C A C G T A A T G C C G A T
A C G T A C G T A C G T A C G T G A C T T C G A G T C A G C A T T A G C C G T A C A G T A G C T C G T A T G C A G A T C A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AAGTWAAWGTTTAACT
AAAGGTCAAAGGTCAAC-
 A C G T A C G T G T C A T C G A T A C G A C G T G C A T C G T A G T C A C G T A A T C G A C G T G A C T A C G T G T C A C G T A A T G C C G A T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AAGTWAAWGTTTAACT
GAAAGTGAAAGT------
 A C G T A C G T G T C A T C G A T A C G A C G T G C A T C G T A G T C A C G T A A T C G A C G T G A C T A C G T G T C A C G T A A T G C C G A T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AAGTWAAWGTTTAACT
AGAAAGTGAAAGTGA----
 A C G T A C G T A C G T G T C A T C G A T A C G A C G T G C A T C G T A G T C A C G T A A T C G A C G T G A C T A C G T G T C A C G T A A T G C C G A T
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A A C G T A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAGTWAAWGTTTAACT
GAGGTCAAAGGTCA---
 A C G T G T C A T C G A T A C G A C G T G C A T C G T A G T C A C G T A A T C G A C G T G A C T A C G T G T C A C G T A A T G C C G A T
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AAGTWAAWGTTTAACT
-ANGNAAAGGTCA---
 G T C A T C G A T A C G A C G T G C A T C G T A G T C A C G T A A T C G A C G T G A C T A C G T G T C A C G T A A T G C C G A T
A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAGTWAAWGTTTAACT
GAAAGTGAAAGT------
 A C G T A C G T G T C A T C G A T A C G A C G T G C A T C G T A G T C A C G T A A T C G A C G T G A C T A C G T G T C A C G T A A T G C C G A T
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T