Information for 4-CGCCACCTGGTGG (Motif 3)

A G T C C T A G A G T C A G T C G T C A A G T C G T A C G A C T C T A G A T C G A C G T A T C G A C T G
Reverse Opposite:
A G T C A T G C T G C A A T G C G A T C C T G A A C T G T C A G C A G T A C T G A C T G A G T C C T A G
p-value:1e-31
log p-value:-7.184e+01
Information Content per bp:1.786
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.21%
Number of Background Sequences with motif41.4
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets58.4 +/- 21.5bp
Average Position of motif in Background56.4 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---CGCCACCTGGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C C T A G A G T C A G T C G T C A A G T C G T A C G A C T C T A G A T C G A C G T A T C G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.91
Offset:-6
Orientation:forward strand
Alignment:------CGCCACCTGGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T A G A G T C A G T C G T C A A G T C G T A C G A C T C T A G A T C G A C G T A T C G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----CGCCACCTGGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C C T A G A G T C A G T C G T C A A G T C G T A C G A C T C T A G A T C G A C G T A T C G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CGCCACCTGGTGG
-GCCATCTGTT--
 A G T C C T A G A G T C A G T C G T C A A G T C G T A C G A C T C T A G A T C G A C G T A T C G A C T G
A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T

FIGLA/MA0820.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CGCCACCTGGTGG
-ACCACCTGTT--
 A G T C C T A G A G T C A G T C G T C A A G T C G T A C G A C T C T A G A T C G A C G T A T C G A C T G
A C G T G C T A G T A C A G T C G T C A A T G C T A G C C G A T C A T G A C G T C G A T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGCCACCTGGTGG--
GGCCYCCTGCTGDGH
 A G T C C T A G A G T C A G T C G T C A A G T C G T A C G A C T C T A G A T C G A C G T A T C G A C T G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGCCACCTGGTGG
-GCCAGCTGBTNB
 A G T C C T A G A G T C A G T C G T C A A G T C G T A C G A C T C T A G A T C G A C G T A T C G A C T G
A C G T T C A G T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G C T T G C A A G T C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGCCACCTGGTGG
-NNCACCTGNN--
 A G T C C T A G A G T C A G T C G T C A A G T C G T A C G A C T C T A G A T C G A C G T A T C G A C T G
A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGCCACCTGGTGG
-ACCATCTGTT--
 A G T C C T A G A G T C A G T C G T C A A G T C G T A C G A C T C T A G A T C G A C G T A T C G A C T G
A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGCCACCTGGTGG-
--CCCCCTGCTGTG
 A G T C C T A G A G T C A G T C G T C A A G T C G T A C G A C T C T A G A T C G A C G T A T C G A C T G A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G