Information for 3-GSCGGCAGGTTCCCTG (Motif 5)

A C T G A T G C G T A C T A C G A C T G A T G C G T C A A T C G A T C G C A G T A C G T A G T C A G T C A G T C C G A T A T C G
Reverse Opposite:
A T G C G C T A C T A G A C T G A C T G T G C A G T C A T A G C A T G C A C G T A T C G A G T C A T G C A C T G A T C G A G T C
p-value:1e-13
log p-value:-3.058e+01
Information Content per bp:1.690
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif61.8
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets53.1 +/- 21.7bp
Average Position of motif in Background52.2 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HES7/MA0822.1/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GSCGGCAGGTTCCCTG
--TGGCACGTGCCA--
 A C T G A T G C G T A C T A C G A C T G A T G C G T C A A T C G A T C G C A G T A C G T A G T C A G T C A G T C C G A T A T C G
A C G T A C G T G A C T T C A G T C A G G A T C T C G A A G T C C T A G G A C T T C A G G A T C A G T C C T G A A C G T A C G T

HES5/MA0821.1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GSCGGCAGGTTCCCTG
--CGGCACGTGCCA--
 A C T G A T G C G T A C T A C G A C T G A T G C G T C A A T C G A T C G C A G T A C G T A G T C A G T C A G T C C G A T A T C G
A C G T A C G T G A T C T C A G T C A G A G T C C T G A G A T C C T A G A G C T A C T G A G T C A G T C C T G A A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.51
Offset:9
Orientation:reverse strand
Alignment:GSCGGCAGGTTCCCTG---
---------TGCCCAGNHW
 A C T G A T G C G T A C T A C G A C T G A T G C G T C A A T C G A T C G C A G T A C G T A G T C A G T C A G T C C G A T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GSCGGCAGGTTCCCTG
--SDGCAGGTGCNS--
 A C T G A T G C G T A C T A C G A C T G A T G C G T C A A T C G A T C G C A G T A C G T A G T C A G T C A G T C C G A T A T C G
A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GSCGGCAGGTTCCCTG
--CAGCTGTTTCCT--
 A C T G A T G C G T A C T A C G A C T G A T G C G T C A A T C G A T C G C A G T A C G T A G T C A G T C A G T C C G A T A T C G
A C G T A C G T G T A C C G T A C A T G T A G C A G C T A C T G A G C T G C A T A C G T A G T C A G T C A G C T A C G T A C G T

HEY2/MA0649.1/Jaspar

Match Rank:6
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GSCGGCAGGTTCCCTG
---GGCACGTGNC---
 A C T G A T G C G T A C T A C G A C T G A T G C G T C A A T C G A T C G C A G T A C G T A G T C A G T C A G T C C G A T A T C G
A C G T A C G T A C G T A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:7
Score:0.50
Offset:3
Orientation:forward strand
Alignment:GSCGGCAGGTTCCCTG
---GGGAATTTCC---
 A C T G A T G C G T A C T A C G A C T G A T G C G T C A A T C G A T C G C A G T A C G T A G T C A G T C A G T C C G A T A T C G
A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.49
Offset:3
Orientation:forward strand
Alignment:GSCGGCAGGTTCCCTG
---GGGGATTTCC---
 A C T G A T G C G T A C T A C G A C T G A T G C G T C A A T C G A T C G C A G T A C G T A G T C A G T C A G T C C G A T A T C G
A C G T A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:GSCGGCAGGTTCCCTG
---GGGAATTTCC---
 A C T G A T G C G T A C T A C G A C T G A T G C G T C A A T C G A T C G C A G T A C G T A G T C A G T C A G T C C G A T A T C G
A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:10
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GSCGGCAGGTTCCCTG
ADGGYAGYAGCATCT---
 A C G T A C G T A C T G A T G C G T A C T A C G A C T G A T G C G T C A A T C G A T C G C A G T A C G T A G T C A G T C A G T C C G A T A T C G
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T A C G T