Information for 8-AAGGGCAGACACTCTC (Motif 19)

C G T A C T G A A C T G A C T G A T C G A G T C C T G A A C T G C G T A A T G C C G T A A G T C C A G T A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G G C T A A C T G A C G T A T C G A C G T A G T C A G C T A C T G A T G C A G T C T A G C A G C T A C G T
p-value:1e-9
log p-value:-2.153e+01
Information Content per bp:1.915
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.2 +/- 18.2bp
Average Position of motif in Background47.6 +/- 11.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAGGGCAGACACTCTC
AGCGGCACACACGCAA
 C G T A C T G A A C T G A C T G A T C G A G T C C T G A A C T G C G T A A T G C C G T A A G T C C A G T A G T C A C G T A G T C
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AAGGGCAGACACTCTC
----CCAGACRSVB--
 C G T A C T G A A C T G A C T G A T C G A G T C C T G A A C T G C G T A A T G C C G T A A G T C C A G T A G T C A C G T A G T C
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AAGGGCAGACACTCTC
----CCAGACAG----
 C G T A C T G A A C T G A C T G A T C G A G T C C T G A A C T G C G T A A T G C C G T A A G T C C A G T A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AAGGGCAGACACTCTC
CAAAGGTCAG--------
 A C G T A C G T C G T A C T G A A C T G A C T G A T C G A G T C C T G A A C T G C G T A A T G C C G T A A G T C C A G T A G T C A C G T A G T C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AAGGGCAGACACTCTC
TNNGGGCAG--------
 A C G T C G T A C T G A A C T G A C T G A T C G A G T C C T G A A C T G C G T A A T G C C G T A A G T C C A G T A G T C A C G T A G T C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AAGGGCAGACACTCTC
CAAATCCAGACATCACA
 A C G T C G T A C T G A A C T G A C T G A T C G A G T C C T G A A C T G C G T A A T G C C G T A A G T C C A G T A G T C A C G T A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AAGGGCAGACACTCTC
----BCAGACWA----
 C G T A C T G A A C T G A C T G A T C G A G T C C T G A A C T G C G T A A T G C C G T A A G T C C A G T A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AAGGGCAGACACTCTC
CAAGGHCANV-------
 A C G T C G T A C T G A A C T G A C T G A T C G A G T C C T G A A C T G C G T A A T G C C G T A A G T C C A G T A G T C A C G T A G T C
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AAGGGCAGACACTCTC
AGGTGHCAGACA-----
 A C G T C G T A C T G A A C T G A C T G A T C G A G T C C T G A A C T G C G T A A T G C C G T A A G T C C A G T A G T C A C G T A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:10
Score:0.51
Offset:7
Orientation:forward strand
Alignment:AAGGGCAGACACTCTC------
-------ACCACTCTCGGTCAC
 C G T A C T G A A C T G A C T G A T C G A G T C C T G A A C T G C G T A A T G C C G T A A G T C C A G T A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C