Information for 3-AYTGTCTGTA (Motif 16)

G C T A A G C T A C G T A C T G A G C T A G T C A C G T A T C G A C G T T C G A
Reverse Opposite:
A G C T T G C A A T G C C G T A C T A G C T G A A G T C C G T A C T G A C G A T
p-value:1e-9
log p-value:-2.235e+01
Information Content per bp:1.779
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.71%
Number of Background Sequences with motif243.3
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets48.2 +/- 26.1bp
Average Position of motif in Background52.2 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AYTGTCTGTA
-CTGTCTGG-
 G C T A A G C T A C G T A C T G A G C T A G T C A C G T A T C G A C G T T C G A
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AYTGTCTGTA
-TWGTCTGV-
 G C T A A G C T A C G T A C T G A G C T A G T C A C G T A T C G A C G T T C G A
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---AYTGTCTGTA----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T G C T A A G C T A C G T A C T G A G C T A G T C A C G T A T C G A C G T T C G A A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AYTGTCTGTA
VBSYGTCTGG-
 A C G T G C T A A G C T A C G T A C T G A G C T A G T C A C G T A T C G A C G T T C G A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AYTGTCTGTA---
CCATTGTATGCAAAT
 A C G T A C G T G C T A A G C T A C G T A C T G A G C T A G T C A C G T A T C G A C G T T C G A A C G T A C G T A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

Sox17/MA0078.1/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AYTGTCTGTA
CTCATTGTC----
 A C G T A C G T A C G T G C T A A G C T A C G T A C T G A G C T A G T C A C G T A T C G A C G T T C G A
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----AYTGTCTGTA
NNNCCATTGTGTNAN
 A C G T A C G T A C G T A C G T A C G T G C T A A G C T A C G T A C T G A G C T A G T C A C G T A T C G A C G T T C G A
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Foxq1/MA0040.1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AYTGTCTGTA
TATTGTTTATT
 A C G T G C T A A G C T A C G T A C T G A G C T A G T C A C G T A T C G A C G T T C G A
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AYTGTCTGTA
NCCATTGTTY---
 A C G T A C G T A C G T G C T A A G C T A C G T A C T G A G C T A G T C A C G T A T C G A C G T T C G A
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AYTGTCTGTA
CCATTGTTYB--
 A C G T A C G T G C T A A G C T A C G T A C T G A G C T A G T C A C G T A T C G A C G T T C G A
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T