Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 770)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46875)	% of Background Sequences with Motif
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-218	-5.036e+02	0.0000	379.0	49.22%	3304.7	7.05%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-216	-4.984e+02	0.0000	326.0	42.34%	2192.8	4.68%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-210	-4.853e+02	0.0000	341.0	44.29%	2600.3	5.55%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-207	-4.775e+02	0.0000	226.0	29.35%	761.7	1.63%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-195	-4.495e+02	0.0000	329.0	42.73%	2643.7	5.64%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-150	-3.470e+02	0.0000	285.0	37.01%	2608.7	5.57%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-139	-3.219e+02	0.0000	259.0	33.64%	2264.0	4.83%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-132	-3.051e+02	0.0000	277.0	35.97%	2871.5	6.13%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-120	-2.773e+02	0.0000	214.0	27.79%	1711.5	3.65%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-114	-2.640e+02	0.0000	227.0	29.48%	2124.0	4.53%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-112	-2.590e+02	0.0000	236.0	30.65%	2391.6	5.10%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-99	-2.298e+02	0.0000	162.0	21.04%	1097.2	2.34%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-76	-1.751e+02	0.0000	277.0	35.97%	5015.2	10.70%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-24	-5.706e+01	0.0000	32.0	4.16%	143.3	0.31%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-19	-4.488e+01	0.0000	33.0	4.29%	235.0	0.50%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-16	-3.762e+01	0.0000	57.0	7.40%	919.3	1.96%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-11	-2.737e+01	0.0000	39.0	5.06%	603.6	1.29%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-11	-2.537e+01	0.0000	53.0	6.88%	1101.4	2.35%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-10	-2.518e+01	0.0000	63.0	8.18%	1467.0	3.13%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-10	-2.512e+01	0.0000	46.0	5.97%	872.8	1.86%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-10	-2.492e+01	0.0000	59.0	7.66%	1329.3	2.84%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-10	-2.448e+01	0.0000	59.0	7.66%	1345.0	2.87%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-9	-2.265e+01	0.0000	50.0	6.49%	1081.4	2.31%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-8	-1.914e+01	0.0000	27.0	3.51%	423.0	0.90%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-7	-1.730e+01	0.0000	45.0	5.84%	1086.4	2.32%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-7	-1.646e+01	0.0000	119.0	15.45%	4413.1	9.42%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-6	-1.589e+01	0.0000	28.0	3.64%	530.7	1.13%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-6	-1.490e+01	0.0000	13.0	1.69%	128.3	0.27%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-6	-1.451e+01	0.0000	36.0	4.68%	854.7	1.82%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-5	-1.210e+01	0.0001	20.0	2.60%	370.7	0.79%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-5	-1.157e+01	0.0001	62.0	8.05%	2100.4	4.48%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-4	-1.136e+01	0.0001	18.0	2.34%	325.3	0.69%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-4	-1.079e+01	0.0002	53.0	6.88%	1746.7	3.73%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-4	-9.533e+00	0.0008	18.0	2.34%	375.4	0.80%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-3	-9.092e+00	0.0012	53.0	6.88%	1867.1	3.98%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-3	-8.609e+00	0.0018	16.0	2.08%	334.7	0.71%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-3	-8.279e+00	0.0025	57.0	7.40%	2122.0	4.53%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-3	-8.244e+00	0.0025	47.0	6.10%	1653.2	3.53%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-3	-8.103e+00	0.0028	43.0	5.58%	1479.6	3.16%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-3	-7.717e+00	0.0041	11.0	1.43%	193.1	0.41%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-3	-7.162e+00	0.0069	79.0	10.26%	3330.0	7.11%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-3	-7.154e+00	0.0069	37.0	4.81%	1273.7	2.72%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-3	-7.152e+00	0.0069	51.0	6.62%	1933.8	4.13%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-3	-6.944e+00	0.0080	10.0	1.30%	180.5	0.39%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-2	-6.708e+00	0.0099	93.0	12.08%	4116.7	8.78%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-2	-6.578e+00	0.0110	29.0	3.77%	951.4	2.03%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-2	-6.443e+00	0.0123	36.0	4.68%	1280.1	2.73%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-2	-6.339e+00	0.0134	181.0	23.51%	9000.2	19.21%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-6.337e+00	0.0134	16.0	2.08%	415.3	0.89%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-2	-6.098e+00	0.0164	45.0	5.84%	1739.4	3.71%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-2	-6.028e+00	0.0172	52.0	6.75%	2091.8	4.46%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-2	-5.817e+00	0.0208	43.0	5.58%	1668.7	3.56%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.657e+00	0.0240	21.0	2.73%	656.7	1.40%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-2	-5.602e+00	0.0249	32.0	4.16%	1159.1	2.47%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-2	-5.576e+00	0.0251	186.0	24.16%	9445.1	20.16%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-2	-5.531e+00	0.0258	7.0	0.91%	119.4	0.25%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-2	-5.492e+00	0.0263	6.0	0.78%	91.0	0.19%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-2	-5.451e+00	0.0269	188.0	24.42%	9587.3	20.46%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-2	-5.357e+00	0.0291	21.0	2.73%	674.9	1.44%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-2	-5.242e+00	0.0321	28.0	3.64%	1000.0	2.13%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-5.154e+00	0.0345	43.0	5.58%	1734.4	3.70%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-2	-4.872e+00	0.0450	35.0	4.55%	1368.0	2.92%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-4.785e+00	0.0483	13.0	1.69%	364.1	0.78%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-4.699e+00	0.0518	26.0	3.38%	950.0	2.03%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-4.699e+00	0.0518	28.0	3.64%	1045.0	2.23%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-2	-4.632e+00	0.0537	58.0	7.53%	2564.5	5.47%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-2	-4.628e+00	0.0537	87.0	11.30%	4113.5	8.78%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-4.547e+00	0.0567	24.0	3.12%	867.9	1.85%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-4.538e+00	0.0567	16.0	2.08%	504.1	1.08%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-4.470e+00	0.0596	95.0	12.34%	4578.2	9.77%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-4.438e+00	0.0606	6.0	0.78%	113.3	0.24%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-4.437e+00	0.0606	19.0	2.47%	644.1	1.37%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-4.390e+00	0.0618	35.0	4.55%	1415.9	3.02%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-4.359e+00	0.0629	5.0	0.65%	83.7	0.18%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-1	-4.359e+00	0.0629	45.0	5.84%	1925.3	4.11%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-4.359e+00	0.0629	24.0	3.12%	882.2	1.88%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-4.328e+00	0.0629	26.0	3.38%	980.6	2.09%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-4.250e+00	0.0666	36.0	4.68%	1480.0	3.16%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-4.240e+00	0.0666	4.0	0.52%	56.7	0.12%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-3.806e+00	0.1011	4.0	0.52%	64.2	0.14%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-3.791e+00	0.1015	25.0	3.25%	980.6	2.09%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-3.785e+00	0.1015	2.0	0.26%	14.2	0.03%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-3.715e+00	0.1068	35.0	4.55%	1490.1	3.18%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-3.665e+00	0.1109	6.0	0.78%	135.3	0.29%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.511e+00	0.1280	104.0	13.51%	5275.8	11.26%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-3.489e+00	0.1293	44.0	5.71%	1988.2	4.24%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-3.427e+00	0.1359	46.0	5.97%	2103.7	4.49%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-1	-3.426e+00	0.1359	8.0	1.04%	222.1	0.47%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-3.344e+00	0.1443	34.0	4.42%	1484.9	3.17%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-3.325e+00	0.1455	2.0	0.26%	18.5	0.04%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.279e+00	0.1507	23.0	2.99%	931.7	1.99%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-3.232e+00	0.1562	8.0	1.04%	231.7	0.49%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-3.197e+00	0.1601	10.0	1.30%	319.0	0.68%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-3.125e+00	0.1701	40.0	5.19%	1829.2	3.90%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-3.114e+00	0.1702	44.0	5.71%	2044.5	4.36%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-3.044e+00	0.1806	33.0	4.29%	1471.3	3.14%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-3.028e+00	0.1817	10.0	1.30%	329.0	0.70%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.005e+00	0.1839	46.0	5.97%	2169.9	4.63%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.001e+00	0.1839	17.0	2.21%	661.9	1.41%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-2.989e+00	0.1839	201.0	26.10%	11018.4	23.51%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-2.953e+00	0.1880	15.0	1.95%	569.0	1.21%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.947e+00	0.1880	23.0	2.99%	967.0	2.06%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.933e+00	0.1882	58.0	7.53%	2837.0	6.05%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-2.821e+00	0.2084	25.0	3.25%	1083.3	2.31%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-2.804e+00	0.2100	5.0	0.65%	127.4	0.27%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-2.800e+00	0.2100	4.0	0.52%	89.5	0.19%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.781e+00	0.2109	41.0	5.32%	1936.0	4.13%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-2.738e+00	0.2180	52.0	6.75%	2543.9	5.43%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-2.717e+00	0.2207	68.0	8.83%	3435.4	7.33%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-2.701e+00	0.2222	9.0	1.17%	304.3	0.65%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.676e+00	0.2257	26.0	3.38%	1153.3	2.46%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.673e+00	0.2257	4.0	0.52%	93.7	0.20%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.642e+00	0.2295	43.0	5.58%	2068.7	4.41%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.627e+00	0.2309	23.0	2.99%	1003.6	2.14%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-2.582e+00	0.2393	58.0	7.53%	2906.9	6.20%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-2.547e+00	0.2457	60.0	7.79%	3025.4	6.46%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-2.504e+00	0.2543	39.0	5.06%	1874.2	4.00%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-2.437e+00	0.2695	5.0	0.65%	142.1	0.30%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-2.392e+00	0.2797	33.0	4.29%	1567.8	3.35%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-1	-2.318e+00	0.2986	21.0	2.73%	937.4	2.00%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.295e+00	0.3030	64.0	8.31%	3307.1	7.06%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-2.286e+00	0.3034	12.0	1.56%	479.0	1.02%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.244e+00	0.3137	5.0	0.65%	151.8	0.32%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.227e+00	0.3165	8.0	1.04%	289.4	0.62%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.193e+00	0.3248	24.0	3.12%	1113.2	2.38%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.178e+00	0.3274	12.0	1.56%	489.9	1.05%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.156e+00	0.3317	12.0	1.56%	491.5	1.05%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.144e+00	0.3334	8.0	1.04%	295.6	0.63%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.123e+00	0.3378	13.0	1.69%	545.9	1.16%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-2.113e+00	0.3384	45.0	5.84%	2280.1	4.87%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.090e+00	0.3437	44.0	5.71%	2229.9	4.76%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-2.079e+00	0.3448	6.0	0.78%	205.4	0.44%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.063e+00	0.3479	6.0	0.78%	206.6	0.44%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.060e+00	0.3479	14.0	1.82%	603.5	1.29%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.988e+00	0.3694	14.0	1.82%	611.8	1.31%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.986e+00	0.3694	80.0	10.39%	4304.0	9.18%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.980e+00	0.3694	13.0	1.69%	560.9	1.20%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.954e+00	0.3737	42.0	5.45%	2146.8	4.58%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.923e+00	0.3799	3.0	0.39%	80.4	0.17%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.923e+00	0.3799	3.0	0.39%	80.3	0.17%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.914e+00	0.3809	10.0	1.30%	413.5	0.88%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.897e+00	0.3844	49.0	6.36%	2554.4	5.45%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.888e+00	0.3855	30.0	3.90%	1490.7	3.18%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.813e+00	0.4126	134.0	17.40%	7517.4	16.04%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.775e+00	0.4257	2.0	0.26%	45.1	0.10%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.741e+00	0.4373	2.0	0.26%	46.7	0.10%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.678e+00	0.4625	22.0	2.86%	1085.4	2.32%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.671e+00	0.4627	24.0	3.12%	1197.3	2.56%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.641e+00	0.4736	4.0	0.52%	138.8	0.30%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.635e+00	0.4736	50.0	6.49%	2678.9	5.72%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.627e+00	0.4736	30.0	3.90%	1541.5	3.29%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.625e+00	0.4736	9.0	1.17%	390.7	0.83%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.624e+00	0.4736	33.0	4.29%	1711.7	3.65%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.577e+00	0.4881	3.0	0.39%	95.2	0.20%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.574e+00	0.4881	4.0	0.52%	142.1	0.30%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.565e+00	0.4881	8.0	1.04%	344.4	0.73%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.564e+00	0.4881	13.0	1.69%	610.6	1.30%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.542e+00	0.4930	5.0	0.65%	193.2	0.41%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.537e+00	0.4930	3.0	0.39%	98.0	0.21%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.475e+00	0.5202	5.0	0.65%	198.3	0.42%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.437e+00	0.5372	5.0	0.65%	201.2	0.43%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.435e+00	0.5372	17.0	2.21%	849.4	1.81%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.428e+00	0.5372	18.0	2.34%	906.2	1.93%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.422e+00	0.5372	27.0	3.51%	1415.8	3.02%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.390e+00	0.5494	9.0	1.17%	416.3	0.89%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.382e+00	0.5508	7.0	0.91%	310.4	0.66%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.379e+00	0.5508	64.0	8.31%	3570.7	7.62%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.362e+00	0.5516	1.0	0.13%	18.5	0.04%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.362e+00	0.5516	1.0	0.13%	18.2	0.04%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.357e+00	0.5516	29.0	3.77%	1544.1	3.30%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.324e+00	0.5663	7.0	0.91%	316.5	0.68%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.318e+00	0.5667	15.0	1.95%	757.1	1.62%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.311e+00	0.5671	64.0	8.31%	3594.4	7.67%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.309e+00	0.5671	4.0	0.52%	160.9	0.34%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.300e+00	0.5671	71.0	9.22%	4010.0	8.56%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.295e+00	0.5671	4.0	0.52%	161.4	0.34%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.277e+00	0.5736	9.0	1.17%	430.8	0.92%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.273e+00	0.5736	16.0	2.08%	821.3	1.75%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.263e+00	0.5751	48.0	6.23%	2672.6	5.70%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.262e+00	0.5751	29.0	3.77%	1567.4	3.34%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.249e+00	0.5768	5.0	0.65%	217.8	0.46%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.229e+00	0.5853	37.0	4.81%	2040.4	4.35%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.227e+00	0.5853	5.0	0.65%	219.9	0.47%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.220e+00	0.5853	2.0	0.26%	66.5	0.14%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.211e+00	0.5861	3.0	0.39%	116.1	0.25%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.167e+00	0.6093	6.0	0.78%	279.5	0.60%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.161e+00	0.6099	64.0	8.31%	3651.3	7.79%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.141e+00	0.6187	11.0	1.43%	561.7	1.20%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.138e+00	0.6187	13.0	1.69%	675.5	1.44%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.111e+00	0.6309	52.0	6.75%	2960.3	6.32%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.105e+00	0.6309	10.0	1.30%	510.4	1.09%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.069e+00	0.6474	4.0	0.52%	180.1	0.38%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.069e+00	0.6474	4.0	0.52%	180.1	0.38%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.055e+00	0.6530	9.0	1.17%	461.5	0.98%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.045e+00	0.6564	84.0	10.91%	4892.5	10.44%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.034e+00	0.6603	23.0	2.99%	1276.9	2.72%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.010e+00	0.6728	37.0	4.81%	2109.0	4.50%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.010e+00	0.6728	7.0	0.91%	354.9	0.76%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.002e+00	0.6728	91.0	11.82%	5333.7	11.38%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-9.873e-01	0.6781	2.0	0.26%	79.4	0.17%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-9.850e-01	0.6781	3.0	0.39%	133.4	0.28%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-9.825e-01	0.6781	75.0	9.74%	4384.5	9.36%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-9.733e-01	0.6781	3.0	0.39%	134.9	0.29%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-9.531e-01	0.6879	18.0	2.34%	1003.1	2.14%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-9.448e-01	0.6903	187.0	24.29%	11152.7	23.80%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-9.443e-01	0.6903	8.0	1.04%	422.0	0.90%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-9.435e-01	0.6903	135.0	17.53%	8013.0	17.10%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-9.423e-01	0.6903	67.0	8.70%	3924.7	8.37%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-9.332e-01	0.6903	7.0	0.91%	365.2	0.78%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.222e-01	0.6903	6.0	0.78%	309.9	0.66%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-8.774e-01	0.7174	12.0	1.56%	667.1	1.42%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-8.730e-01	0.7174	22.0	2.86%	1261.4	2.69%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-8.682e-01	0.7174	10.0	1.30%	551.4	1.18%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-8.580e-01	0.7212	11.0	1.43%	612.5	1.31%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-8.215e-01	0.7445	26.0	3.38%	1517.0	3.24%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-8.193e-01	0.7445	187.0	24.29%	11248.0	24.00%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-8.138e-01	0.7445	44.0	5.71%	2601.8	5.55%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-8.032e-01	0.7478	8.0	1.04%	445.9	0.95%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-7.721e-01	0.7680	30.0	3.90%	1774.5	3.79%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-7.594e-01	0.7742	2.0	0.26%	96.7	0.21%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-7.565e-01	0.7742	45.0	5.84%	2687.9	5.74%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-7.536e-01	0.7742	4.0	0.52%	215.2	0.46%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-7.486e-01	0.7742	12.0	1.56%	696.2	1.49%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-7.452e-01	0.7742	8.0	1.04%	456.9	0.98%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-7.336e-01	0.7768	27.0	3.51%	1607.5	3.43%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-7.241e-01	0.7807	4.0	0.52%	220.0	0.47%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-7.130e-01	0.7860	9.0	1.17%	523.6	1.12%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-6.946e-01	0.7971	31.0	4.03%	1865.2	3.98%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.862e-01	0.8003	8.0	1.04%	468.9	1.00%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.735e-01	0.8070	25.0	3.25%	1508.1	3.22%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-6.722e-01	0.8070	56.0	7.27%	3398.5	7.25%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.707e-01	0.8070	54.0	7.01%	3277.2	6.99%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-6.583e-01	0.8088	12.0	1.56%	719.3	1.53%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.466e-01	0.8148	5.0	0.65%	292.2	0.62%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-6.460e-01	0.8148	43.0	5.58%	2619.0	5.59%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-6.161e-01	0.8330	11.0	1.43%	669.9	1.43%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-6.144e-01	0.8330	22.0	2.86%	1347.5	2.88%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-6.113e-01	0.8330	101.0	13.12%	6185.8	13.20%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.099e-01	0.8330	8.0	1.04%	485.7	1.04%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.093e-01	0.8330	10.0	1.30%	609.2	1.30%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-6.010e-01	0.8330	17.0	2.21%	1044.7	2.23%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.773e-01	0.8444	20.0	2.60%	1238.7	2.64%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-5.743e-01	0.8444	26.0	3.38%	1610.6	3.44%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-5.663e-01	0.8468	1.0	0.13%	51.3	0.11%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-5.561e-01	0.8520	13.0	1.69%	811.3	1.73%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-5.511e-01	0.8528	52.0	6.75%	3225.0	6.88%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.484e-01	0.8528	9.0	1.17%	563.8	1.20%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-5.476e-01	0.8528	10.0	1.30%	626.7	1.34%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-5.316e-01	0.8591	5.0	0.65%	314.9	0.67%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.281e-01	0.8591	3.0	0.39%	186.3	0.40%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-5.236e-01	0.8591	21.0	2.73%	1322.4	2.82%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-5.231e-01	0.8591	33.0	4.29%	2068.8	4.41%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-5.218e-01	0.8591	6.0	0.78%	380.5	0.81%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-5.194e-01	0.8591	19.0	2.47%	1199.6	2.56%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-5.164e-01	0.8591	9.0	1.17%	572.1	1.22%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-5.026e-01	0.8602	25.0	3.25%	1581.5	3.37%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-5.009e-01	0.8602	10.0	1.30%	640.4	1.37%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-4.860e-01	0.8678	32.0	4.16%	2026.6	4.32%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.816e-01	0.8683	5.0	0.65%	325.5	0.69%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-4.801e-01	0.8683	38.0	4.94%	2403.0	5.13%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-4.796e-01	0.8683	16.0	2.08%	1027.4	2.19%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.795e-01	0.8683	12.0	1.56%	774.6	1.65%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-4.793e-01	0.8683	72.0	9.35%	4510.3	9.62%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-4.419e-01	0.8863	9.0	1.17%	595.3	1.27%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-4.303e-01	0.8933	53.0	6.88%	3371.6	7.19%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.296e-01	0.8933	32.0	4.16%	2059.5	4.39%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.176e-01	0.8979	6.0	0.78%	407.2	0.87%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-4.143e-01	0.8979	11.0	1.43%	734.9	1.57%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-4.136e-01	0.8979	30.0	3.90%	1943.1	4.15%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-4.008e-01	0.9030	4.0	0.52%	278.7	0.59%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.951e-01	0.9048	3.0	0.39%	212.0	0.45%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-3.928e-01	0.9048	4.0	0.52%	280.5	0.60%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.898e-01	0.9048	2.0	0.26%	142.7	0.30%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.887e-01	0.9048	49.0	6.36%	3154.7	6.73%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-3.844e-01	0.9048	66.0	8.57%	4220.5	9.01%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.771e-01	0.9048	4.0	0.52%	284.1	0.61%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-3.737e-01	0.9048	2.0	0.26%	145.5	0.31%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-3.725e-01	0.9048	36.0	4.68%	2349.4	5.01%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.677e-01	0.9048	23.0	2.99%	1528.0	3.26%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.516e-01	0.9146	9.0	1.17%	629.0	1.34%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.506e-01	0.9146	28.0	3.64%	1857.8	3.96%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.460e-01	0.9146	34.0	4.42%	2242.6	4.79%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.293e-01	0.9253	2.0	0.26%	154.6	0.33%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-3.231e-01	0.9279	9.0	1.17%	640.2	1.37%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.056e-01	0.9409	65.0	8.44%	4237.8	9.04%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-3.039e-01	0.9409	15.0	1.95%	1048.0	2.24%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.931e-01	0.9461	11.0	1.43%	788.6	1.68%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.808e-01	0.9544	19.0	2.47%	1324.1	2.83%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.713e-01	0.9602	87.0	11.30%	5661.7	12.08%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.653e-01	0.9627	16.0	2.08%	1137.3	2.43%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.637e-01	0.9627	65.0	8.44%	4286.3	9.15%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.615e-01	0.9627	32.0	4.16%	2184.9	4.66%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.528e-01	0.9648	2.0	0.26%	173.0	0.37%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.459e-01	0.9682	22.0	2.86%	1547.2	3.30%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.453e-01	0.9682	101.0	13.12%	6577.0	14.03%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.434e-01	0.9682	43.0	5.58%	2910.3	6.21%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.387e-01	0.9682	7.0	0.91%	543.0	1.16%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.333e-01	0.9682	47.0	6.10%	3178.2	6.78%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.310e-01	0.9682	7.0	0.91%	547.8	1.17%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.225e-01	0.9713	1.0	0.13%	98.2	0.21%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.012e-01	0.9889	4.0	0.52%	345.5	0.74%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.993e-01	0.9889	15.0	1.95%	1119.2	2.39%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.991e-01	0.9889	8.0	1.04%	636.8	1.36%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.984e-01	0.9889	77.0	10.00%	5140.1	10.97%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.903e-01	0.9889	11.0	1.43%	852.3	1.82%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.890e-01	0.9889	2.0	0.26%	194.4	0.41%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.878e-01	0.9889	7.0	0.91%	572.3	1.22%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.857e-01	0.9889	6.0	0.78%	501.3	1.07%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.781e-01	0.9889	12.0	1.56%	931.6	1.99%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.774e-01	0.9889	4.0	0.52%	357.8	0.76%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.725e-01	0.9889	151.0	19.61%	9848.3	21.02%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.624e-01	0.9918	28.0	3.64%	2029.7	4.33%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.574e-01	0.9936	29.0	3.77%	2102.0	4.49%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.549e-01	0.9936	1.0	0.13%	118.4	0.25%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.536e-01	0.9936	2.0	0.26%	209.8	0.45%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.419e-01	0.9995	4.0	0.52%	378.8	0.81%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.321e-01	1.0000	1.0	0.13%	127.5	0.27%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.272e-01	1.0000	10.0	1.30%	837.2	1.79%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.245e-01	1.0000	69.0	8.96%	4773.5	10.19%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.202e-01	1.0000	63.0	8.18%	4395.8	9.38%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.168e-01	1.0000	31.0	4.03%	2299.0	4.91%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.134e-01	1.0000	57.0	7.40%	4021.2	8.58%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.110e-01	1.0000	5.0	0.65%	480.6	1.03%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.072e-01	1.0000	6.0	0.78%	561.9	1.20%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-9.989e-02	1.0000	1.0	0.13%	143.1	0.31%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-9.847e-02	1.0000	81.0	10.52%	5617.0	11.99%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-9.842e-02	1.0000	38.0	4.94%	2803.2	5.98%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-9.817e-02	1.0000	1.0	0.13%	144.3	0.31%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-7.795e-02	1.0000	17.0	2.21%	1408.9	3.01%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.519e-02	1.0000	70.0	9.09%	5017.6	10.71%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-6.392e-02	1.0000	1.0	0.13%	169.2	0.36%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.713e-02	1.0000	18.0	2.34%	1527.7	3.26%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-5.078e-02	1.0000	9.0	1.17%	876.5	1.87%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-4.918e-02	1.0000	34.0	4.42%	2674.6	5.71%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-4.761e-02	1.0000	4.0	0.52%	477.7	1.02%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-4.073e-02	1.0000	16.0	2.08%	1431.9	3.06%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.370e-02	1.0000	18.0	2.34%	1605.1	3.43%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-3.117e-02	1.0000	24.0	3.12%	2052.1	4.38%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.893e-02	1.0000	1.0	0.13%	216.5	0.46%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.492e-02	1.0000	11.0	1.43%	1115.0	2.38%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.440e-02	1.0000	91.0	11.82%	6650.7	14.19%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.319e-02	1.0000	7.0	0.91%	800.9	1.71%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.212e-02	1.0000	35.0	4.55%	2890.1	6.17%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.141e-02	1.0000	1.0	0.13%	234.1	0.50%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.772e-02	1.0000	3.0	0.39%	466.9	1.00%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.716e-02	1.0000	8.0	1.04%	915.0	1.95%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-9.757e-03	1.0000	31.0	4.03%	2740.9	5.85%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-7.731e-03	1.0000	28.0	3.64%	2556.5	5.46%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	43.3	0.09%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	84.8	0.18%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	15.6	0.03%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	0.0	0.00%	136.3	0.29%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	29.7	0.06%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	6.4	0.01%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	0.0	0.00%	208.5	0.44%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	53.4	0.11%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	0.000e+00	1.0000	0.0	0.00%	146.7	0.31%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	30.9	0.07%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.1	0.00%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	205.9	0.44%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	15.4	0.03%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	27.0	0.06%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	8.7	0.02%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	0.000e+00	1.0000	0.0	0.00%	95.8	0.20%