Information for 2-GCCACCTAATGGDVAC (Motif 2)

C T A G A G T C A G T C G T C A A G T C A G T C A C G T C G T A T C G A A G C T A C T G A C T G C T A G T A G C G C T A T G A C
Reverse Opposite:
A C T G C G A T A C T G G A C T A G T C A G T C C T G A A G C T A C G T C G T A A C T G C T A G A C G T A C T G A C T G A G T C
p-value:1e-29
log p-value:-6.893e+01
Information Content per bp:1.821
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.9 +/- 25.1bp
Average Position of motif in Background43.9 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----GCCACCTAATGGDVAC
ANAGTGCCACCTGGTGGCCA-
 A C G T A C G T A C G T A C G T A C G T C T A G A G T C A G T C G T C A A G T C A G T C A C G T C G T A T C G A A G C T A C T G A C T G C T A G T A G C G C T A T G A C
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----GCCACCTAATGGDVAC
TAGCGCCCCCTGGTGGCCA-
 A C G T A C G T A C G T A C G T C T A G A G T C A G T C G T C A A G T C A G T C A C G T C G T A T C G A A G C T A C T G A C T G C T A G T A G C G C T A T G A C
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.74
Offset:-7
Orientation:forward strand
Alignment:-------GCCACCTAATGGDVAC
CNNBRGCGCCCCCTGSTGGC---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C A G T C G T C A A G T C A G T C A C G T C G T A T C G A A G C T A C T G A C T G C T A G T A G C G C T A T G A C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T A C G T

Znf423/MA0116.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCCACCTAATGGDVAC
GGCACCCAGGGGTGC-
 C T A G A G T C A G T C G T C A A G T C A G T C A C G T C G T A T C G A A G C T A C T G A C T G C T A G T A G C G C T A T G A C
T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCCACCTAATGGDVAC
ACCACTTAA-------
 C T A G A G T C A G T C G T C A A G T C A G T C A C G T C G T A T C G A A G C T A C T G A C T G C T A G T A G C G C T A T G A C
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCCACCTAATGGDVAC
ACCACTTAA-------
 C T A G A G T C A G T C G T C A A G T C A G T C A C G T C G T A T C G A A G C T A C T G A C T G C T A G T A G C G C T A T G A C
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCCACCTAATGGDVAC
TGACACCT---------
 A C G T C T A G A G T C A G T C G T C A A G T C A G T C A C G T C G T A T C G A A G C T A C T G A C T G C T A G T A G C G C T A T G A C
G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCCACCTAATGGDVAC
CTTAACCACTTAAGGAT---
 A C G T A C G T A C G T A C G T C T A G A G T C A G T C G T C A A G T C A G T C A C G T C G T A T C G A A G C T A C T G A C T G C T A G T A G C G C T A T G A C
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T A C G T A C G T A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCCACCTAATGGDVAC
ACATGCTACCTAATAC----
 A C G T A C G T A C G T A C G T C T A G A G T C A G T C G T C A A G T C A G T C A C G T C G T A T C G A A G C T A C T G A C T G C T A G T A G C G C T A T G A C
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C A C G T A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GCCACCTAATGGDVAC
-----CTAATKGV---
 C T A G A G T C A G T C G T C A A G T C A G T C A C G T C G T A T C G A A G C T A C T G A C T G C T A G T A G C G C T A T G A C
A C G T A C G T A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T A C G T