Information for 1-NNHTGTTTACWYW (Motif 1)

A G C T G A C T G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G T C C G T A
Reverse Opposite:
G C A T T C A G C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A C T G A T C G A
p-value:1e-238
log p-value:-5.501e+02
Information Content per bp:1.612
Number of Target Sequences with motif363.0
Percentage of Target Sequences with motif47.14%
Number of Background Sequences with motif2553.1
Percentage of Background Sequences with motif5.45%
Average Position of motif in Targets52.4 +/- 17.5bp
Average Position of motif in Background50.4 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:1
Score:0.98
Offset:1
Orientation:forward strand
Alignment:NNHTGTTTACWYW
-CNTGTTTACATA
 A G C T G A C T G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G T C C G T A
A C G T A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:NNHTGTTTACWYW--
BSNTGTTTACWYWGN
 A G C T G A C T G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G T C C G T A A C G T A C G T
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G

FOXA1/MA0148.3/Jaspar

Match Rank:3
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-NNHTGTTTACWYW-
TCCATGTTTACTTTG
 A C G T A G C T G A C T G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G T C C G T A A C G T
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.96
Offset:3
Orientation:reverse strand
Alignment:NNHTGTTTACWYW
---TGTTTACTTT
 A G C T G A C T G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G T C C G T A
A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

Foxa2/MA0047.2/Jaspar

Match Rank:5
Score:0.96
Offset:3
Orientation:forward strand
Alignment:NNHTGTTTACWYW--
---TGTTTACTTAGG
 A G C T G A C T G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:6
Score:0.96
Offset:3
Orientation:reverse strand
Alignment:NNHTGTTTACWYW
---TGTTTACTTT
 A G C T G A C T G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G T C C G T A
A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:7
Score:0.95
Offset:3
Orientation:forward strand
Alignment:NNHTGTTTACWYW
---TRTTTACTTW
 A G C T G A C T G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G T C C G T A
A C G T A C G T A C G T A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A

FOXC2/MA0846.1/Jaspar

Match Rank:8
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:NNHTGTTTACWYW
-TTTGTTTACTTA
 A G C T G A C T G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G T C C G T A
A C G T C G A T C G A T G A C T T C A G G A C T C A G T C A G T C T G A A G T C C G A T G A C T C G T A

FOXC1/MA0032.2/Jaspar

Match Rank:9
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:NNHTGTTTACWYW
--ATATTTACATA
 A G C T G A C T G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G T C C G T A
A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A

FOXO4/MA0848.1/Jaspar

Match Rank:10
Score:0.93
Offset:3
Orientation:reverse strand
Alignment:NNHTGTTTACWYW
---TGTTTAC---
 A G C T G A C T G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G T C C G T A
A C G T A C G T A C G T C G A T C T A G G A C T C A G T A C G T G C T A A G T C A C G T A C G T A C G T