Information for 5-GCAAAGGYTAAMC (Motif 8)

A T C G A G T C C G T A C G T A C G T A C T A G A T C G A G T C A G C T C T G A C G T A G T C A T G A C
Reverse Opposite:
A C T G A C G T C G A T A G C T C T G A C T A G A T G C A G T C A C G T A C G T A C G T A C T G A T G C
p-value:1e-12
log p-value:-2.988e+01
Information Content per bp:1.827
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif14.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets44.0 +/- 24.3bp
Average Position of motif in Background50.0 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GCAAAGGYTAAMC
ANGNAAAGGTCA---
 A C G T A C G T A T C G A G T C C G T A C G T A C G T A C T A G A T C G A G T C A G C T C T G A C G T A G T C A T G A C
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----GCAAAGGYTAAMC
TAGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T A T C G A G T C C G T A C G T A C G T A C T A G A T C G A G T C A G C T C T G A C G T A G T C A T G A C
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----GCAAAGGYTAAMC
TGGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T A T C G A G T C C G T A C G T A C G T A C T A G A T C G A G T C A G C T C T G A C G T A G T C A T G A C
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GCAAAGGYTAAMC
GTAGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A C G T A C G T A C T A G A T C G A G T C A G C T C T G A C G T A G T C A T G A C
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCAAAGGYTAAMC
-CAAAGGTCAG--
 A T C G A G T C C G T A C G T A C G T A C T A G A T C G A G T C A G C T C T G A C G T A G T C A T G A C
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCAAAGGYTAAMC-
TCTCAAAGGTCACGAG
 A C G T A C G T A T C G A G T C C G T A C G T A C G T A C T A G A T C G A G T C A G C T C T G A C G T A G T C A T G A C A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GCAAAGGYTAAMC
AGAGTCCAAAGTCCA---
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A C G T A C G T A C T A G A T C G A G T C A G C T C T G A C G T A G T C A T G A C
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCAAAGGYTAAMC-
TCTCAAAGGTCACCTG
 A C G T A C G T A T C G A G T C C G T A C G T A C G T A C T A G A T C G A G T C A G C T C T G A C G T A G T C A T G A C A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0161.1_Rxra_2/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCAAAGGYTAAMC-
TCGCGAAGGTTGTACT
 A C G T A C G T A T C G A G T C C G T A C G T A C G T A C T A G A T C G A G T C A G C T C T G A C G T A G T C A T G A C A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------GCAAAGGYTAAMC
CANAGNNCAAAGTCCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A C G T A C G T A C T A G A T C G A G T C A G C T C T G A C G T A G T C A T G A C
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T