Information for 11-TGCCTGCCCG (Motif 20)

A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G C T A G A C T G A G T C C G T A A C T G A C T G A G T C G T C A
p-value:1e-6
log p-value:-1.473e+01
Information Content per bp:1.942
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif16.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets50.3 +/- 26.4bp
Average Position of motif in Background51.4 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TGCCTGCCCG--
---CTGCCCGCA
 A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

NRF1/MA0506.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGCCTGCCCG
GCGCCTGCGCA
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C T G
T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TGCCTGCCCG--
---ATGCCCACC
 A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C T G A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGCCTGCCCG
TTGCGTGCVA-
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C T G
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TGCCTGCCCG
NNACTTGCCTT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C T G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGCCTGCCCG
ATGCCAACC--
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C T G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TGCCTGCCCG--
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C T G A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGCCTGCCCG-----
-ACATGCCCGGGCAT
 A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGCCTGCCCG-----
GGGTGTGCCCAAAAGG
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C T G A C G T A C G T A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGCCTGCCCG
TTCCCGCCWG
 A C G T A C T G A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C T G
A G C T A C G T A T G C A T G C A G T C A C T G A G T C A T G C G C T A A T C G