Information for 8-GAGCCAATCA (Motif 12)

A T C G C T G A C A T G A T G C A G T C C G T A T C G A C G A T A T G C C T G A
Reverse Opposite:
A G C T A T C G G C T A A G C T A C G T C T A G A T C G G T A C A G C T A T G C
p-value:1e-10
log p-value:-2.497e+01
Information Content per bp:1.830
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.68%
Number of Background Sequences with motif196.7
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets58.7 +/- 23.1bp
Average Position of motif in Background48.9 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--GAGCCAATCA
ACTAGCCAATCA
 A C G T A C G T A T C G C T G A C A T G A T G C A G T C C G T A T C G A C G A T A T G C C T G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----GAGCCAATCA-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A T C G C T G A C A T G A T G C A G T C C G T A T C G A C G A T A T G C C T G A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.82
Offset:1
Orientation:forward strand
Alignment:GAGCCAATCA-
-AGCCAATCGG
 A T C G C T G A C A T G A T G C A G T C C G T A T C G A C G A T A T G C C T G A A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

PH0026.1_Duxbl/Jaspar

Match Rank:4
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GAGCCAATCA------
CGACCCAATCAACGGTG
 A C G T A T C G C T G A C A T G A T G C A G T C C G T A T C G A C G A T A T G C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.77
Offset:3
Orientation:forward strand
Alignment:GAGCCAATCA-
---CCAATCAA
 A T C G C T G A C A T G A T G C A G T C C G T A T C G A C G A T A T G C C T G A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

NFYA/MA0060.2/Jaspar

Match Rank:6
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GAGCCAATCA-------
TGGACCAATCAGCACTCT
 A C G T A T C G C T G A C A T G A T G C A G T C C G T A T C G A C G A T A T G C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

DUXA/MA0884.1/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GAGCCAATCA-
CTAATTTAATCAA
 A C G T A C G T A T C G C T G A C A T G A T G C A G T C C G T A T C G A C G A T A T G C C T G A A C G T
G A T C G A C T C T G A T C G A G A C T A G C T A G C T T G C A C T G A A C G T A G T C C G T A C T G A

PH0014.1_Cphx/Jaspar

Match Rank:8
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GAGCCAATCA--
ATGATCGAATCAAA
 A C G T A C G T A T C G C T G A C A T G A T G C A G T C C G T A T C G A C G A T A T G C C T G A A C G T A C G T
C T G A C G A T T C A G C G T A C A G T A T G C T A C G T G C A G T C A G A C T A G T C C G T A T C G A G C T A

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GAGCCAATCA
-TGCCAA---
 A T C G C T G A C A T G A T G C A G T C C G T A T C G A C G A T A T G C C T G A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GAGCCAATCA
CGTGCCAAG--
 A C G T A T C G C T G A C A T G A T G C A G T C C G T A T C G A C G A T A T G C C T G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T