Information for 2-RCAGCAGAGRCWCCTC (Motif 2)

C T A G A T G C T C G A A C T G G A T C C G T A C T A G T C G A C T A G T C A G A T G C C G A T G T A C G T A C A C G T A T G C
Reverse Opposite:
A T C G G T C A A C T G C A T G C G T A A T C G A G T C A G T C A G C T A G T C G A C T C A T G A G T C A G C T A T C G A G T C
p-value:1e-16
log p-value:-3.777e+01
Information Content per bp:1.708
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.9 +/- 26.1bp
Average Position of motif in Background52.6 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-RCAGCAGAGRCWCCTC
CACAGCAGGGGG-----
 A C G T C T A G A T G C T C G A A C T G G A T C C G T A C T A G T C G A C T A G T C A G A T G C C G A T G T A C G T A C A C G T A T G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-RCAGCAGAGRCWCCTC
CACAGCGGGGGGTC---
 A C G T C T A G A T G C T C G A A C T G G A T C C G T A C T A G T C G A C T A G T C A G A T G C C G A T G T A C G T A C A C G T A T G C
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--RCAGCAGAGRCWCCTC
NCGCAGCGGGGGGTC---
 A C G T A C G T C T A G A T G C T C G A A C T G G A T C C G T A C T A G T C G A C T A G T C A G A T G C C G A T G T A C G T A C A C G T A T G C
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RCAGCAGAGRCWCCTC
ANCAGCTG---------
 A C G T C T A G A T G C T C G A A C T G G A T C C G T A C T A G T C G A C T A G T C A G A T G C C G A T G T A C G T A C A C G T A T G C
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--RCAGCAGAGRCWCCTC
DCHCAGCAGGRGGCC---
 A C G T A C G T C T A G A T G C T C G A A C T G G A T C C G T A C T A G T C G A C T A G T C A G A T G C C G A T G T A C G T A C A C G T A T G C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RCAGCAGAGRCWCCTC
AACAGCTG---------
 A C G T C T A G A T G C T C G A A C T G G A T C C G T A C T A G T C G A C T A G T C A G A T G C C G A T G T A C G T A C A C G T A T G C
T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RCAGCAGAGRCWCCTC
GACAGCTGCAG------
 A C G T C T A G A T G C T C G A A C T G G A T C C G T A C T A G T C G A C T A G T C A G A T G C C G A T G T A C G T A C A C G T A T G C
T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RCAGCAGAGRCWCCTC
CGCAGCTGCG-------
 A C G T C T A G A T G C T C G A A C T G G A T C C G T A C T A G T C G A C T A G T C A G A T G C C G A T G T A C G T A C A C G T A T G C
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RCAGCAGAGRCWCCTC
AACAGCTGCAG------
 A C G T C T A G A T G C T C G A A C T G G A T C C G T A C T A G T C G A C T A G T C A G A T G C C G A T G T A C G T A C A C G T A T G C
T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:RCAGCAGAGRCWCCTC
HCAGCTGDTN------
 C T A G A T G C T C G A A C T G G A T C C G T A C T A G T C G A C T A G T C A G A T G C C G A T G T A C G T A C A C G T A T G C
G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T A C G T A C G T A C G T A C G T