Information for 5-GCSSRGGTTGTCM (Motif 2)

C T A G A G T C A T G C A T G C C T G A A C T G A C T G G A C T A C G T A T C G A C G T A G T C G T A C
Reverse Opposite:
A C T G A C T G C G T A A T G C C G T A C G T A A G T C A G T C A G C T A T C G A T C G A C T G A G T C
p-value:1e-16
log p-value:-3.687e+01
Information Content per bp:1.869
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.6 +/- 26.1bp
Average Position of motif in Background90.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCSSRGGTTGTCM
-CGTGGGTGGTCC
 C T A G A G T C A T G C A T G C C T G A A C T G A C T G G A C T A C G T A T C G A C G T A G T C G T A C
A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCSSRGGTTGTCM----
NNANTGGTGGTCTTNNN
 C T A G A G T C A T G C A T G C C T G A A C T G A C T G G A C T A C G T A T C G A C G T A G T C G T A C A C G T A C G T A C G T A C G T
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:GCSSRGGTTGTCM-
-------NTGTCAN
 C T A G A G T C A T G C A T G C C T G A A C T G A C T G G A C T A C G T A T C G A C G T A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.58
Offset:7
Orientation:forward strand
Alignment:GCSSRGGTTGTCM--
-------YTGWCADY
 C T A G A G T C A T G C A T G C C T G A A C T G A C T G G A C T A C G T A T C G A C G T A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:GCSSRGGTTGTCM-
------CCTGTCAA
 C T A G A G T C A T G C A T G C C T G A A C T G A C T G G A C T A C G T A T C G A C G T A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCSSRGGTTGTCM----
-NGTAGGTTGGCATNNN
 C T A G A G T C A T G C A T G C C T G A A C T G A C T G G A C T A C G T A T C G A C G T A G T C G T A C A C G T A C G T A C G T A C G T
A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCSSRGGTTGTCM
GCAGTGATTT---
 C T A G A G T C A T G C A T G C C T G A A C T G A C T G G A C T A C G T A T C G A C G T A G T C G T A C
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCSSRGGTTGTCM-----
-TNNNNGGTGTCATNTNT
 C T A G A G T C A T G C A T G C C T G A A C T G A C T G G A C T A C G T A T C G A C G T A G T C G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.55
Offset:8
Orientation:forward strand
Alignment:GCSSRGGTTGTCM---
--------TGTCANYT
 C T A G A G T C A T G C A T G C C T G A A C T G A C T G G A C T A C G T A T C G A C G T A G T C G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GCSSRGGTTGTCM-
------GCTGTCAA
 C T A G A G T C A T G C A T G C C T G A A C T G A C T G G A C T A C G T A T C G A C G T A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A