Information for 6-SCAAAGGTCA (Motif 5)

A T C G A G T C G T C A T C G A C G T A A T C G C T A G A C G T G T A C C T G A
Reverse Opposite:
A G C T C A T G T G C A G A T C T A G C A C G T A G C T A C G T C T A G T A G C
p-value:1e-19
log p-value:-4.566e+01
Information Content per bp:1.739
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif6.08%
Number of Background Sequences with motif558.6
Percentage of Background Sequences with motif1.24%
Average Position of motif in Targets50.5 +/- 21.9bp
Average Position of motif in Background50.9 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.93
Offset:1
Orientation:forward strand
Alignment:SCAAAGGTCA-
-CAAAGGTCAG
 A T C G A G T C G T C A T C G A C G T A A T C G C T A G A C G T G T A C C T G A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--SCAAAGGTCA----
TCTCAAAGGTCACCTG
 A C G T A C G T A T C G A G T C G T C A T C G A C G T A A T C G C T A G A C G T G T A C C T G A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--SCAAAGGTCA----
TCTCAAAGGTCACGAG
 A C G T A C G T A T C G A G T C G T C A T C G A C G T A A T C G C T A G A C G T G T A C C T G A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:4
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--SCAAAGGTCA
ANGNAAAGGTCA
 A C G T A C G T A T C G A G T C G T C A T C G A C G T A A T C G C T A G A C G T G T A C C T G A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.83
Offset:1
Orientation:forward strand
Alignment:SCAAAGGTCA----
-CAAAGGTCAAGGG
 A T C G A G T C G T C A T C G A C G T A A T C G C T A G A C G T G T A C C T G A A C G T A C G T A C G T A C G T
A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----SCAAAGGTCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C G T C A T C G A C G T A A T C G C T A G A C G T G T A C C T G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----SCAAAGGTCA
TAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A T C G A G T C G T C A T C G A C G T A A T C G C T A G A C G T G T A C C T G A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.82
Offset:-4
Orientation:reverse strand
Alignment:----SCAAAGGTCA
TGGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A T C G A G T C G T C A T C G A C G T A A T C G C T A G A C G T G T A C C T G A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Nr2f6/MA0677.1/Jaspar

Match Rank:9
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----SCAAAGGTCA
GAGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T A T C G A G T C G T C A T C G A C G T A A T C G C T A G A C G T G T A C C T G A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:SCAAAGGTCA-
-TCAAGGTCAN
 A T C G A G T C G T C A T C G A C G T A A T C G C T A G A C G T G T A C C T G A A C G T
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C