Information for 9-CTGTGAAACATGA (Motif 13)

A G T C A C G T A C T G A C G T A T C G C G T A C G T A G T C A A G T C G T C A A C G T A T C G C G T A
Reverse Opposite:
A C G T A T G C C G T A A C G T A C T G A C G T A C G T G C A T A T G C C G T A G T A C C G T A C T A G
p-value:1e-11
log p-value:-2.655e+01
Information Content per bp:1.860
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.7 +/- 28.4bp
Average Position of motif in Background50.9 +/- 8.1bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:CTGTGAAACATGA---
----GWAAYHTGABMC
 A G T C A C G T A C T G A C G T A T C G C G T A C G T A G T C A A G T C G T C A A C G T A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CTGTGAAACATGA---
----GWAAYHTGAKMC
 A G T C A C G T A C T G A C G T A T C G C G T A C G T A G T C A A G T C G T C A A C G T A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGTGAAACATGA
-TTTGAAACCG--
 A G T C A C G T A C T G A C G T A T C G C G T A C G T A G T C A A G T C G T C A A C G T A T C G C G T A
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGTGAAACATGA
-KTTCACACCT--
 A G T C A C G T A C T G A C G T A T C G C G T A C G T A G T C A A G T C G T C A A C G T A T C G C G T A
A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T A C G T A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTGTGAAACATGA---
--GCAAAACATTACTA
 A G T C A C G T A C T G A C G T A T C G C G T A C G T A G T C A A G T C G T C A A C G T A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTGTGAAACATGA
-ACTGAAACCA--
 A G T C A C G T A C T G A C G T A T C G C G T A C G T A G T C A A G T C G T C A A C G T A T C G C G T A
A C G T G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTGTGAAACATGA-
-GGTTAAACATTAA
 A G T C A C G T A C T G A C G T A T C G C G T A C G T A G T C A A G T C G T C A A C G T A T C G C G T A A C G T
A C G T C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A

PH0085.1_Irx4/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGTGAAACATGA-----
-NNTTTTACATGTANNNT
 A G T C A C G T A C T G A C G T A T C G C G T A C G T A G T C A A G T C G T C A A C G T A T C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C A T T A C G G C A T G C A T C A G T C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G A C T C G T A G C A T G C A T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:9
Score:0.55
Offset:8
Orientation:forward strand
Alignment:CTGTGAAACATGA-
--------CATGAC
 A G T C A C G T A C T G A C G T A T C G C G T A C G T A G T C A A G T C G T C A A C G T A T C G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C

PH0086.1_Irx5/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTGTGAAACATGA-----
-ANTNNTACATGTANNTN
 A G T C A C G T A C T G A C G T A T C G C G T A C G T A G T C A A G T C G T C A A C G T A T C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T