Information for 19-AGVSCAGDGGCCAGCT (Motif 29)

C G T A A T C G T A C G T A G C T A G C G T C A C T A G C A G T A C T G C A T G T A G C A G T C C G T A A C T G A T G C A G C T
Reverse Opposite:
C T G A A T C G G T A C G C A T C T A G A T C G G T A C A G T C G T C A A G T C C A G T A T C G A T C G A G T C A T G C G C A T
p-value:1e-7
log p-value:-1.841e+01
Information Content per bp:1.624
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.18%
Number of Background Sequences with motif348.9
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets48.8 +/- 23.6bp
Average Position of motif in Background54.3 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGVSCAGDGGCCAGCT
AGAGTCCAAAGTCCA---
 A C G T A C G T C G T A A T C G T A C G T A G C T A G C G T C A C T A G C A G T A C T G C A T G T A G C A G T C C G T A A C T G A T G C A G C T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGVSCAGDGGCCAGCT
CANAGNNCAAAGTCCA---
 A C G T A C G T A C G T C G T A A T C G T A C G T A G C T A G C G T C A C T A G C A G T A C T G C A T G T A G C A G T C C G T A A C T G A T G C A G C T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGVSCAGDGGCCAGCT
TAGGGCAAAGGTCA---
 A C G T C G T A A T C G T A C G T A G C T A G C G T C A C T A G C A G T A C T G C A T G T A G C A G T C C G T A A C T G A T G C A G C T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGVSCAGDGGCCAGCT
GTAGGGCAAAGGTCA---
 A C G T A C G T C G T A A T C G T A C G T A G C T A G C G T C A C T A G C A G T A C T G C A T G T A G C A G T C C G T A A C T G A T G C A G C T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:forward strand
Alignment:AGVSCAGDGGCCAGCT
----CAAAGGTCAG--
 C G T A A T C G T A C G T A G C T A G C G T C A C T A G C A G T A C T G C A T G T A G C A G T C C G T A A C T G A T G C A G C T
A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGVSCAGDGGCCAGCT
TGGGGCAAAGGTCA---
 A C G T C G T A A T C G T A C G T A G C T A G C G T C A C T A G C A G T A C T G C A T G T A G C A G T C C G T A A C T G A T G C A G C T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGVSCAGDGGCCAGCT--
TCAGCACCATGGACAGCTCC
 A C G T A C G T C G T A A T C G T A C G T A G C T A G C G T C A C T A G C A G T A C T G C A T G T A G C A G T C C G T A A C T G A T G C A G C T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGVSCAGDGGCCAGCT
GAGGTCAAAGGTCA---
 A C G T C G T A A T C G T A C G T A G C T A G C G T C A C T A G C A G T A C T G C A T G T A G C A G T C C G T A A C T G A T G C A G C T
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T A C G T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGVSCAGDGGCCAGCT
AGGGGTCAGAGGTCA---
 A C G T A C G T C G T A A T C G T A C G T A G C T A G C G T C A C T A G C A G T A C T G C A T G T A G C A G T C C G T A A C T G A T G C A G C T
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AGVSCAGDGGCCAGCT--
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T C G T A A T C G T A C G T A G C T A G C G T C A C T A G C A G T A C T G C A T G T A G C A G T C C G T A A C T G A T G C A G C T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C