Information for 17-AAGGGGAATAAAGCCC (Motif 25)

C T G A T C G A A T C G A C T G A C T G A C T G G T C A C G T A A C G T C G T A C G T A C G T A A C T G A G T C A G T C A G T C
Reverse Opposite:
C T A G C T A G A C T G A G T C A C G T A C G T A C G T G T C A A C G T A C G T A G T C A G T C A G T C A T G C A C G T A G C T
p-value:1e-8
log p-value:-1.991e+01
Information Content per bp:1.902
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.0 +/- 23.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0121.1_Obox1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAGGGGAATAAAGCCC
TTAAGGGGATTAACTAC-
 A C G T A C G T C T G A T C G A A T C G A C T G A C T G A C T G G T C A C G T A A C G T C G T A C G T A C G T A A C T G A G T C A G T C A G T C
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGGGGAATAAAGCCC
AAAGGTAATAAAATTT
 C T G A T C G A A T C G A C T G A C T G A C T G G T C A C G T A A C G T C G T A C G T A C G T A A C T G A G T C A G T C A G T C
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PB0124.1_Gabpa_2/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AAGGGGAATAAAGCCC
NNNNGGGGGAAGANGG---
 A C G T A C G T A C G T C T G A T C G A A T C G A C T G A C T G A C T G G T C A C G T A A C G T C G T A C G T A C G T A A C T G A G T C A G T C A G T C
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AAGGGGAATAAAGCCC
----GGAACAAAGR--
 C T G A T C G A A T C G A C T G A C T G A C T G G T C A C G T A A C G T C G T A C G T A C G T A A C T G A G T C A G T C A G T C
A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAGGGGAATAAAGCCC
TTAGAGGGATTAACAAT-
 A C G T A C G T C T G A T C G A A T C G A C T G A C T G A C T G G T C A C G T A A C G T C G T A C G T A C G T A A C T G A G T C A G T C A G T C
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T A C G T

PH0122.1_Obox2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAGGGGAATAAAGCCC
TGAGGGGGATTAACTAT-
 A C G T A C G T C T G A T C G A A T C G A C T G A C T G A C T G G T C A C G T A A C G T C G T A C G T A C G T A A C T G A G T C A G T C A G T C
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AAGGGGAATAAAGCCC
TAGAGGGATTAAATTTC
 A C G T C T G A T C G A A T C G A C T G A C T G A C T G G T C A C G T A A C G T C G T A C G T A C G T A A C T G A G T C A G T C A G T C
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AAGGGGAATAAAGCCC
--AAGCCATAAAA---
 C T G A T C G A A T C G A C T G A C T G A C T G G T C A C G T A A C G T C G T A C G T A C G T A A C T G A G T C A G T C A G T C
A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T

PH0126.1_Obox6/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAGGGGAATAAAGCCC
AAAAACGGATTATTG---
 A C G T A C G T C T G A T C G A A T C G A C T G A C T G A C T G G T C A C G T A A C G T C G T A C G T A C G T A A C T G A G T C A G T C A G T C
G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAGGGGAATAAAGCCC
AAGAGGATTAG-----
 C T G A T C G A A T C G A C T G A C T G A C T G G T C A C G T A A C G T C G T A C G T A C G T A A C T G A G T C A G T C A G T C
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T A C G T A C G T