Information for 1-CACGTGACCC (Motif 2)

T A G C C G T A A G T C C T A G C G A T A C T G T C G A A G T C A G T C T A G C
Reverse Opposite:
A T C G T C A G T C A G A G C T T G A C C G T A G A T C T C A G G C A T A T C G
p-value:1e-40
log p-value:-9.288e+01
Information Content per bp:1.677
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif10.05%
Number of Background Sequences with motif735.1
Percentage of Background Sequences with motif1.56%
Average Position of motif in Targets53.7 +/- 22.6bp
Average Position of motif in Background50.1 +/- 34.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

USF1/MA0093.2/Jaspar

Match Rank:1
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--CACGTGACCC
GCCACGTGACC-
 A C G T A C G T T A G C C G T A A G T C C T A G C G A T A C T G T C G A A G T C A G T C T A G C
T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C A C G T

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGACCC
TCACGTGACC-
 A C G T T A G C C G T A A G T C C T A G C G A T A C T G T C G A A G T C A G T C T A G C
A G C T A G T C G T C A A G T C C T A G A C G T A T C G T C G A A G T C A T G C A C G T

E-box(bHLH)/Promoter/Homer

Match Rank:3
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGACCC-
TCACGTGACCGG
 A C G T T A G C C G T A A G T C C T A G C G A T A C T G T C G A A G T C A G T C T A G C A C G T
A G C T A G T C C G T A A G T C T C A G C G A T A C T G T C G A A T G C T A G C T A C G T A C G

Arntl/MA0603.1/Jaspar

Match Rank:4
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGACCC
NCACGTGACN-
 A C G T T A G C C G T A A G T C C T A G C G A T A C T G T C G A A G T C A G T C T A G C
C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C A C G T

TFEB/MA0692.1/Jaspar

Match Rank:5
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--CACGTGACCC
ATCACGTGAC--
 A C G T A C G T T A G C C G T A A G T C C T A G C G A T A C T G T C G A A G T C A G T C T A G C
T C G A A G C T G T A C G T C A A G T C T C A G G C A T A C T G T G C A A G T C A C G T A C G T

TFE3/MA0831.1/Jaspar

Match Rank:6
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--CACGTGACCC
ATCACGTGAC--
 A C G T A C G T T A G C C G T A A G T C C T A G C G A T A C T G T C G A A G T C A G T C T A G C
T C G A A G C T A T G C G C T A A G T C T C A G G C A T A C T G T G C A G A T C A C G T A C G T

Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:7
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--CACGTGACCC
ACCACGTGAC--
 A C G T A C G T T A G C C G T A A G T C C T A G C G A T A C T G T C G A A G T C A G T C T A G C
T C G A G A T C A G T C C G T A A G T C T C A G A G C T A C T G T G C A A G T C A C G T A C G T

Mitf/MA0620.1/Jaspar

Match Rank:8
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGACCC
NCACGTGACN-
 A C G T T A G C C G T A A G T C C T A G C G A T A C T G T C G A A G T C A G T C T A G C
A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:CACGTGACCC
CACGTGDC--
 T A G C C G T A A G T C C T A G C G A T A C T G T C G A A G T C A G T C T A G C
G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C A C G T A C G T

USF2/MA0526.1/Jaspar

Match Rank:10
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--CACGTGACCC
GTCATGTGACC-
 A C G T A C G T T A G C C G T A A G T C C T A G C G A T A C T G T C G A A G T C A G T C T A G C
T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C A C G T