Information for 14-CTCAGGYCTGAGT (Motif 15)

A G T C A G C T A G T C C G T A A C T G A T C G A G C T A G T C G C A T T A C G C T G A A C T G A C G T
Reverse Opposite:
G T C A A G T C A G C T A T G C C G T A A C T G C T G A A T G C A G T C C G A T A C T G C T G A T A C G
p-value:1e-9
log p-value:-2.153e+01
Information Content per bp:1.809
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif112.6
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets49.1 +/- 27.8bp
Average Position of motif in Background50.4 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTCAGGYCTGAGT---
--CAGGCCNNGGCCNN
 A G T C A G C T A G T C C G T A A C T G A T C G A G C T A G T C G C A T T A C G C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTCAGGYCTGAGT
---AGGCCTNG--
 A G T C A G C T A G T C C G T A A C T G A T C G A G C T A G T C G C A T T A C G C T G A A C T G A C G T
A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTCAGGYCTGAGT-
TTCACGCATGAGTT
 A G T C A G C T A G T C C G T A A C T G A T C G A G C T A G T C G C A T T A C G C T G A A C T G A C G T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTCAGGYCTGAGT--
GTCATGCHTGRCTGS
 A G T C A G C T A G T C C G T A A C T G A T C G A G C T A G T C G C A T T A C G C T G A A C T G A C G T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTCAGGYCTGAGT---
CGTCACGCATGACTGCA
 A C G T A G T C A G C T A G T C C G T A A C T G A T C G A G C T A G T C G C A T T A C G C T G A A C T G A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTCAGGYCTGAGT
---AGGCCTAG--
 A G T C A G C T A G T C C G T A A C T G A T C G A G C T A G T C G C A T T A C G C T G A A C T G A C G T
A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTCAGGYCTGAGT---
CGTCACGCATGACTGCA
 A C G T A G T C A G C T A G T C C G T A A C T G A T C G A G C T A G T C G C A T T A C G C T G A A C T G A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CTCAGGYCTGAGT--
GYCTGGYYTNTGTCA
 A G T C A G C T A G T C C G T A A C T G A T C G A G C T A G T C G C A T T A C G C T G A A C T G A C G T A C G T A C G T
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

ZEB1/MA0103.2/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CTCAGGYCTGAGT
--CAGGTGAGG--
 A G T C A G C T A G T C C G T A A C T G A T C G A G C T A G T C G C A T T A C G C T G A A C T G A C G T
A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CTCAGGYCTGAGT
-TRAGGTCA----
 A G T C A G C T A G T C C G T A A C T G A T C G A G C T A G T C G C A T T A C G C T G A A C T G A C G T
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T