Information for 9-AAGCCTTTAG (Motif 9)

C G T A C T G A C T A G G T A C A G T C A C G T C G A T G A C T C T G A T C A G
Reverse Opposite:
A G T C A G C T C T G A C G T A C G T A C T A G A C T G G A T C A G C T C G A T
p-value:1e-41
log p-value:-9.663e+01
Information Content per bp:1.870
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif8.11%
Number of Background Sequences with motif310.6
Percentage of Background Sequences with motif0.65%
Average Position of motif in Targets50.8 +/- 24.0bp
Average Position of motif in Background51.2 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AAGCCTTTAG
AAACMATTAN
 C G T A C T G A C T A G G T A C A G T C A C G T C G A T G A C T C T G A T C A G
T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

BARHL2/MA0635.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AAGCCTTTAG-
-ANCGTTTANN
 C G T A C T G A C T A G G T A C A G T C A C G T C G A T G A C T C T G A T C A G A C G T
A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

Nr2e3/MA0164.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAGCCTTTAG
CAAGCTT----
 A C G T C G T A C T G A C T A G G T A C A G T C A C G T C G A T G A C T C T G A T C A G
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAGCCTTTAG-
-NNCAATTANN
 C G T A C T G A C T A G G T A C A G T C A C G T C G A T G A C T C T G A T C A G A C G T
A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AAGCCTTTAG
--BCMATTAG
 C G T A C T G A C T A G G T A C A G T C A C G T C G A T G A C T C T G A T C A G
A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AAGCCTTTAG
CNAGGCCT----
 A C G T A C G T C G T A C T G A C T A G G T A C A G T C A C G T C G A T G A C T C T G A T C A G
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:7
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------AAGCCTTTAG
NNGGCCACGCCTTTN-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A C T A G G T A C A G T C A C G T C G A T G A C T C T G A T C A G
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAGCCTTTAG--
AAAAACCATTAAGG
 A C G T A C G T C G T A C T G A C T A G G T A C A G T C A C G T C G A T G A C T C T G A T C A G A C G T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AAGCCTTTAG-
-GGCCATTAAC
 C G T A C T G A C T A G G T A C A G T C A C G T C G A T G A C T C T G A T C A G A C G T
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

VENTX/MA0724.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AAGCCTTTAG
-ACCGATTAG
 C G T A C T G A C T A G G T A C A G T C A C G T C G A T G A C T C T G A T C A G
A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G