Information for 19-CTTCATTTTATTCCAT (Motif 26)

A G T C G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T C G T A A G C T G A C T A G T C A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G C T A G C T G A C T G A A C G T C G T A C G T A C G T A G T C A A C G T A C T G C G T A C T G A A C T G
p-value:1e-8
log p-value:-2.010e+01
Information Content per bp:1.921
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.5 +/- 16.8bp
Average Position of motif in Background64.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0046.1_Hoxa10/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CTTCATTTTATTCCAT-
-TNAATTTTATTACCTN
 A G T C G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T C G T A A G C T G A C T A G T C A G T C C G T A A C G T A C G T
A C G T G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTTCATTTTATTCCAT-
NTNAATTTTATTGNATT
 A G T C G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T C G T A A G C T G A C T A G T C A G T C C G T A A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CTTCATTTTATTCCAT
----NTTTTATGAC--
 A G T C G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T C G T A A G C T G A C T A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:4
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CTTCATTTTATTCCAT
-----TTTTATGGCTN
 A G T C G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T C G T A A G C T G A C T A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CTTCATTTTATTCCAT
----TTTTTATTGC--
 A G T C G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T C G T A A G C T G A C T A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTTCATTTTATTCCAT--
--NAATTTTATTACCTNN
 A G T C G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T C G T A A G C T G A C T A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CTTCATTTTATTCCAT
----NTTTTATTACN-
 A G T C G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T C G T A A G C T G A C T A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTTCATTTTATTCCAT--
--NAATTTTATTACCNNN
 A G T C G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T C G T A A G C T G A C T A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CTTCATTTTATTCCAT
-----TTTTATTGC--
 A G T C G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T C G T A A G C T G A C T A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CTTCATTTTATTCCAT
----NTTTTATTGG--
 A G T C G A C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T C G T A A G C T G A C T A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T