Information for 13-GTTCAKCCTT (Motif 21)

A C T G C G A T A C G T A G T C C G T A A C G T A G T C A G T C A G C T A C G T
Reverse Opposite:
C G T A C T G A A C T G A C T G G T C A A C G T A C T G C G T A C G T A G T A C
p-value:1e-9
log p-value:-2.153e+01
Information Content per bp:1.890
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif38.8
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets61.3 +/- 22.0bp
Average Position of motif in Background54.9 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL002.1_INR/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GTTCAKCCTT
--TCAGTCTT
 A C T G C G A T A C G T A G T C C G T A A C G T A G T C A G T C A G C T A C G T
A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

RHOXF1/MA0719.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GTTCAKCCTT
-ATAATCCC-
 A C T G C G A T A C G T A G T C C G T A A C G T A G T C A G T C A G C T A C G T
A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTTCAKCCTT
NYTAATCCYB
 A C T G C G A T A C G T A G T C C G T A A C G T A G T C A G T C A G C T A C G T
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

PH0137.1_Pitx1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GTTCAKCCTT----
NTTGTTAATCCCTCTNN
 A C G T A C G T A C G T A C T G C G A T A C G T A G T C C G T A A C G T A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

PH0017.1_Cux1_2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GTTCAKCCTT-
TAGTGATCATCATTA
 A C G T A C G T A C G T A C G T A C T G C G A T A C G T A G T C C G T A A C G T A G T C A G T C A G C T A C G T A C G T
G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A

PH0035.1_Gsc/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GTTCAKCCTT---
AATCGTTAATCCCTTTA
 A C G T A C G T A C G T A C G T A C T G C G A T A C G T A G T C C G T A A C G T A G T C A G T C A G C T A C G T A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GTTCAKCCTT
GCTAATCC--
 A C T G C G A T A C G T A G T C C G T A A C G T A G T C A G T C A G C T A C G T
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTTCAKCCTT
-TTAATCCC-
 A C T G C G A T A C G T A G T C C G T A A C G T A G T C A G T C A G C T A C G T
A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTTCAKCCTT
-TTAATCCT-
 A C T G C G A T A C G T A G T C C G T A A C G T A G T C A G T C A G C T A C G T
A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GTTCAKCCTT---
GATAATTAATCCCTCTT
 A C G T A C G T A C G T A C G T A C T G C G A T A C G T A G T C C G T A A C G T A G T C A G T C A G C T A C G T A C G T A C G T A C G T
A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T