Information for 17-CTTYAGTCGMAATTCA (Motif 13)

A T G C A C G T A C G T A G C T C G T A T C A G A G C T A G T C C T A G G T C A C T G A T C G A A C G T A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G G T C A G T C A A C G T A G C T C A G T A G T C A C T G C T G A A G T C C G A T C T G A C G T A C G T A A T C G
p-value:1e-48
log p-value:-1.120e+02
Information Content per bp:1.787
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif4.53%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.9 +/- 18.0bp
Average Position of motif in Background54.2 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CTTYAGTCGMAATTCA------
------AATCAATTCAATAATT
 A T G C A C G T A C G T A G C T C G T A T C A G A G C T A G T C C T A G G T C A C T G A T C G A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:2
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:CTTYAGTCGMAATTCA-----
------TNGAATTTCATTNAN
 A T G C A C G T A C G T A G C T C G T A T C A G A G C T A G T C C T A G G T C A C T G A T C G A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.50
Offset:9
Orientation:forward strand
Alignment:CTTYAGTCGMAATTCA-------
---------ACATTCATGACACG
 A T G C A C G T A C G T A G C T C G T A T C A G A G C T A G T C C T A G G T C A C T G A T C G A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0032.1_IRC900814_1/Jaspar

Match Rank:4
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CTTYAGTCGMAATTCA
GNNATTTGTCGTAANN--
 A C G T A C G T A T G C A C G T A C G T A G C T C G T A T C A G A G C T A G T C C T A G G T C A C T G A T C G A A C G T A C G T A G T C C G T A
T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T A C G T A C G T

PB0037.1_Isgf3g_1/Jaspar

Match Rank:5
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CTTYAGTCGMAATTCA
-CAAAATCGAAACTAA
 A T G C A C G T A C G T A G C T C G T A T C A G A G C T A G T C C T A G G T C A C T G A T C G A A C G T A C G T A G T C C G T A
A C G T T G A C C T G A C T G A C G T A G C T A G C A T A G T C C T A G G T C A C G T A G C T A T A G C G A C T C G T A G C T A

PB0176.1_Sox5_2/Jaspar

Match Rank:6
Score:0.49
Offset:4
Orientation:forward strand
Alignment:CTTYAGTCGMAATTCA---
----TATCATAATTAAGGA
 A T G C A C G T A C G T A G C T C G T A T C A G A G C T A G T C C T A G G T C A C T G A T C G A A C G T A C G T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

RARA::RXRA/MA0159.1/Jaspar

Match Rank:7
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-CTTYAGTCGMAATTCA
AGGTCACGGAGAGGTCA
 A C G T A T G C A C G T A C G T A G C T C G T A T C A G A G C T A G T C C T A G G T C A C T G A T C G A A C G T A C G T A G T C C G T A
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.48
Offset:5
Orientation:forward strand
Alignment:CTTYAGTCGMAATTCA------
-----GACCACATTCATACAAT
 A T G C A C G T A C G T A G C T C G T A T C A G A G C T A G T C C T A G G T C A C T G A T C G A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:CTTYAGTCGMAATTCA
-TTTAAT---------
 A T G C A C G T A C G T A G C T C G T A T C A G A G C T A G T C C T A G G T C A C T G A T C G A A C G T A C G T A G T C C G T A
A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:10
Score:0.48
Offset:8
Orientation:forward strand
Alignment:CTTYAGTCGMAATTCA-
--------AAAAGTCAA
 A T G C A C G T A C G T A G C T C G T A T C A G A G C T A G T C C T A G G T C A C T G A T C G A A C G T A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A