Information for 2-CTCTTAAAAGTAC (Motif 6)

A G T C A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G T A A C T G A G C T C G T A A G T C
Reverse Opposite:
C T A G A C G T T C G A A G T C A C G T A C G T A C G T A G C T C G T A C G T A A C T G C G T A A C T G
p-value:1e-7
log p-value:-1.834e+01
Information Content per bp:1.946
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets59.0 +/- 22.6bp
Average Position of motif in Background30.6 +/- 45.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CTCTTAAAAGTAC
AAAGCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G T A A C T G A G C T C G T A A G T C
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAAAGTAC
GCTCGTAAAAA---
 A C G T A G T C A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G T A A C T G A G C T C G T A A G T C
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CTCTTAAAAGTAC
AAACCTCGTAAAATTT-
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G T A A C T G A G C T C G T A A G T C
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAAAGTAC
GGTCGTAAAATT--
 A C G T A G T C A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G T A A C T G A G C T C G T A A G T C
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTCTTAAAAGTAC-------
---TTCNAAGTACTTNNNNN
 A G T C A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G T A A C T G A G C T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTAAAAGTAC
CCYMATAAAA----
 A C G T A G T C A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G T A A C T G A G C T C G T A A G T C
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTCTTAAAAGTAC
NCYAATAAAA----
 A C G T A G T C A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G T A A C T G A G C T C G T A A G T C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTCTTAAAAGTAC
GTCGTAAAAT---
 A G T C A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G T A A C T G A G C T C G T A A G T C
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTCTTAAAAGTAC-------
---TTTTAAGTACTTAAATT
 A G T C A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G T A A C T G A G C T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

PH0111.1_Nkx2-2/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CTCTTAAAAGTAC
ATAACCACTTGAAAATT-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T C T G A C G T A C G T A C G T A A C T G A G C T C G T A A G T C
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T A C G T