Information for 3-WARAAASSMMRGRYYW (Motif 4)

C G T A C G T A T C A G C G T A C G T A C G T A T A G C T A C G G T A C G T C A C T G A A C T G C T A G A G T C G A C T G C A T
Reverse Opposite:
C G T A C T G A C T A G A G T C A G T C A G C T A C G T A C T G A T G C A T C G A C G T A C G T C G A T A G T C A C G T C G A T
p-value:1e-10
log p-value:-2.494e+01
Information Content per bp:1.743
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif5.19%
Number of Background Sequences with motif53.3
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets47.5 +/- 24.3bp
Average Position of motif in Background57.4 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:WARAAASSMMRGRYYW
-AGAAACGAAAGT---
 C G T A C G T A T C A G C G T A C G T A C G T A T A G C T A C G G T A C G T C A C T G A A C T G C T A G A G T C G A C T G C A T
A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:2
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------WARAAASSMMRGRYYW
TACTGGAAAAAAAA--------
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A T C A G C G T A C G T A C G T A T A G C T A C G G T A C G T C A C T G A A C T G C T A G A G T C G A C T G C A T
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--WARAAASSMMRGRYYW
AAAACAAAGG--------
 A C G T A C G T C G T A C G T A T C A G C G T A C G T A C G T A T A G C T A C G G T A C G T C A C T G A A C T G C T A G A G T C G A C T G C A T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--WARAAASSMMRGRYYW
GAAAAAATTGCAAGG---
 A C G T A C G T C G T A C G T A T C A G C G T A C G T A C G T A T A G C T A C G G T A C G T C A C T G A A C T G C T A G A G T C G A C T G C A T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:WARAAASSMMRGRYYW
RACAAWGG--------
 C G T A C G T A T C A G C G T A C G T A C G T A T A G C T A C G G T A C G T C A C T G A A C T G C T A G A G T C G A C T G C A T
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:WARAAASSMMRGRYYW
--NAAACCACAG----
 C G T A C G T A T C A G C G T A C G T A C G T A T A G C T A C G G T A C G T C A C T G A A C T G C T A G A G T C G A C T G C A T
A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----WARAAASSMMRGRYYW
AGAAGAACAAAGGACTA----
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A T C A G C G T A C G T A C G T A T A G C T A C G G T A C G T C A C T G A A C T G C T A G A G T C G A C T G C A T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:WARAAASSMMRGRYYW
---AAACCACAGC---
 C G T A C G T A T C A G C G T A C G T A C G T A T A G C T A C G G T A C G T C A C T G A A C T G C T A G A G T C G A C T G C A T
A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--WARAAASSMMRGRYYW
GGAACAAAGR--------
 A C G T A C G T C G T A C G T A T C A G C G T A C G T A C G T A T A G C T A C G G T A C G T C A C T G A A C T G C T A G A G T C G A C T G C A T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:WARAAASSMMRGRYYW
---AAACCACANN---
 C G T A C G T A T C A G C G T A C G T A C G T A T A G C T A C G G T A C G T C A C T G A A C T G C T A G A G T C G A C T G C A T
A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T