Information for 4-AGVACAGAAAGGCACC (Motif 6)

C G T A T A C G T G C A C T G A G T A C C G T A A T C G C G T A C T G A C T G A A C T G A C T G A T G C C G T A A T G C A G T C
Reverse Opposite:
T C A G T A C G A C G T A T C G G T A C A G T C A G C T A G C T G C A T A T G C A C G T A C T G A G C T A C G T A T G C C G A T
p-value:1e-10
log p-value:-2.362e+01
Information Content per bp:1.731
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif8.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.0 +/- 21.2bp
Average Position of motif in Background48.2 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.58
Offset:7
Orientation:forward strand
Alignment:AGVACAGAAAGGCACC
-------AAGGTCAC-
 C G T A T A C G T G C A C T G A G T A C C G T A A T C G C G T A C T G A C T G A A C T G A C T G A T G C C G T A A T G C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGVACAGAAAGGCACC
GTAGGTCACTGGGTCA--
 A C G T A C G T C G T A T A C G T G C A C T G A G T A C C G T A A T C G C G T A C T G A C T G A A C T G A C T G A T G C C G T A A T G C A G T C
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGVACAGAAAGGCACC
--AAAACAAAGG----
 C G T A T A C G T G C A C T G A G T A C C G T A A T C G C G T A C T G A C T G A A C T G A C T G A T G C C G T A A T G C A G T C
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGVACAGAAAGGCACC---
---NNNNTTGGGCACNNCN
 C G T A T A C G T G C A C T G A G T A C C G T A A T C G C G T A C T G A C T G A A C T G A C T G A T G C C G T A A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

Rarb/MA0857.1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGVACAGAAAGGCACC
AAAGGTCAAAAGGTCA--
 A C G T A C G T C G T A T A C G T G C A C T G A G T A C C G T A A T C G C G T A C T G A C T G A A C T G A C T G A T G C C G T A A T G C A G T C
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:AGVACAGAAAGGCACC-
-----ACAAAGGNBCCT
 C G T A T A C G T G C A C T G A G T A C C G T A A T C G C G T A C T G A C T G A A C T G A C T G A T G C C G T A A T G C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AGVACAGAAAGGCACC------
CACAAGGGARWARGRCACCATGAGG
 A C G T A C G T A C G T C G T A T A C G T G C A C T G A G T A C C G T A A T C G C G T A C T G A C T G A A C T G A C T G A T G C C G T A A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T A G C T G C A G T A C C T G A C T G A T A C G C T A G C T A G C T G A T C A G C G A T T C G A C T G A C T A G T C A G A G T C C G T A A G T C G T A C C T G A C G A T A C T G C T G A C T A G A T C G

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGVACAGAAAGGCACC
GAGGTCAAAAGGTCA--
 A C G T C G T A T A C G T G C A C T G A G T A C C G T A A T C G C G T A C T G A C T G A A C T G A C T G A T G C C G T A A T G C A G T C
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AGVACAGAAAGGCACC
----AAYTAGGTCA--
 C G T A T A C G T G C A C T G A G T A C C G T A A T C G C G T A C T G A C T G A A C T G A C T G A T G C C G T A A T G C A G T C
A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AGVACAGAAAGGCACC
----AACAAAGG----
 C G T A T A C G T G C A C T G A G T A C C G T A A T C G C G T A C T G A C T G A A C T G A C T G A T G C C G T A A T G C A G T C
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T