Information for 3-GAAAGCTTCGGAG (Motif 6)

A C T G T G C A C G T A C T G A A T C G T G A C C G A T A C G T A G T C T A C G A C T G C G T A C T A G
Reverse Opposite:
A G T C A C G T A G T C A T G C C T A G C G T A C G T A A C T G A T G C A G C T A C G T A C G T T A G C
p-value:1e-11
log p-value:-2.711e+01
Information Content per bp:1.804
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif17.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets54.2 +/- 19.1bp
Average Position of motif in Background55.5 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAAAGCTTCGGAG
-CAAGCTT-----
 A C T G T G C A C G T A C T G A A T C G T G A C C G A T A C G T A G T C T A C G A C T G C G T A C T A G
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:GAAAGCTTCGGAG-
--------CGGAGC
 A C T G T G C A C G T A C T G A A T C G T G A C C G A T A C G T A G T C T A C G A C T G C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GAAAGCTTCGGAG
----GCTTCC---
 A C T G T G C A C G T A C T G A A T C G T G A C C G A T A C G T A G T C T A C G A C T G C G T A C T A G
A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T

HSF4/MA0771.1/Jaspar

Match Rank:4
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:GAAAGCTTCGGAG
GAANNTTCTAGAA
 A C T G T G C A C G T A C T G A A T C G T G A C C G A T A C G T A G T C T A C G A C T G C G T A C T A G
T C A G G C T A G C T A A G T C T C A G C G A T C G A T T A G C A G C T T C G A A T C G G T C A G C T A

PB0115.1_Ehf_2/Jaspar

Match Rank:5
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:GAAAGCTTCGGAG------
---AAGATCGGAANTNNNA
 A C T G T G C A C G T A C T G A A T C G T G A C C G A T A C G T A G T C T A C G A C T G C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C T A A T C G C G T A C G A T T G A C C A T G C T A G C G T A C G T A T G C A G A C T G T C A A G T C G C A T G C T A

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---GAAAGCTTCGGAG
ACTGAAACCA------
 A C G T A C G T A C G T A C T G T G C A C G T A C T G A A T C G T G A C C G A T A C G T A G T C T A C G A C T G C G T A C T A G
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:7
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--GAAAGCTTCGGAG
TAGAANVTTCTAGAA
 A C G T A C G T A C T G T G C A C G T A C T G A A T C G T G A C C G A T A C G T A G T C T A C G A C T G C G T A C T A G
G A C T C T G A T C A G T G C A C G T A A T G C T A C G G A C T C A G T A G T C G A C T C T G A C A T G T C G A C T G A

HSF1/MA0486.2/Jaspar

Match Rank:8
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:GAAAGCTTCGGAG
GAACGTTCTAGAA
 A C T G T G C A C G T A C T G A A T C G T G A C C G A T A C G T A G T C T A C G A C T G C G T A C T A G
C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.46
Offset:4
Orientation:reverse strand
Alignment:GAAAGCTTCGGAG-
----CCTTTGATGT
 A C T G T G C A C G T A C T G A A T C G T G A C C G A T A C G T A G T C T A C G A C T G C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

HSF2/MA0770.1/Jaspar

Match Rank:10
Score:0.46
Offset:0
Orientation:reverse strand
Alignment:GAAAGCTTCGGAG
GAANGTTCTAGAA
 A C T G T G C A C G T A C T G A A T C G T G A C C G A T A C G T A G T C T A C G A C T G C G T A C T A G
T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A