Information for 1-AAMACTTCAC (Motif 4)

C G T A G C T A G T A C G T C A A T G C C A G T A G C T G A T C T C G A T A G C
Reverse Opposite:
A T C G A G C T C T A G T C G A G T C A T A C G C A G T C A T G C G A T G C A T
p-value:1e-13
log p-value:-3.111e+01
Information Content per bp:1.580
Number of Target Sequences with motif97.0
Percentage of Target Sequences with motif11.02%
Number of Background Sequences with motif2279.7
Percentage of Background Sequences with motif4.74%
Average Position of motif in Targets50.4 +/- 26.0bp
Average Position of motif in Background50.4 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AAMACTTCAC
MRSCACTYAA-
 A C G T C G T A G C T A G T A C G T C A A T G C C A G T A G C T G A T C T C G A T A G C
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AAMACTTCAC
RSCACTYRAG
 C G T A G C T A G T A C G T C A A T G C C A G T A G C T G A T C T C G A T A G C
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

NKX2-8/MA0673.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAMACTTCAC
-CCACTTGAA
 C G T A G C T A G T A C G T C A A T G C C A G T A G C T G A T C T C G A T A G C
A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AAMACTTCAC--
GAAAAAATTGCAAGG
 A C G T A C G T A C G T C G T A G C T A G T A C G T C A A T G C C A G T A G C T G A T C T C G A T A G C A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAMACTTCAC
ACCACTTGAA
 C G T A G C T A G T A C G T C A A T G C C A G T A G C T G A T C T C G A T A G C
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AAMACTTCAC---
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T C G T A G C T A G T A C G T C A A T G C C A G T A G C T G A T C T C G A T A G C A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AAMACTTCAC
NAACAAT----
 A C G T C G T A G C T A G T A C G T C A A T G C C A G T A G C T G A T C T C G A T A G C
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAMACTTCAC
AAGCACTTAA-
 A C G T C G T A G C T A G T A C G T C A A T G C C A G T A G C T G A T C T C G A T A G C
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T

SOX8/MA0868.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAMACTTCAC------
AACACTGCACATTGTT
 C G T A G C T A G T A C G T C A A T G C C A G T A G C T G A T C T C G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C G T A A G T C G T C A G T A C A C G T T A C G T G A C C G T A G A T C G T C A A C G T A G C T A C T G A C G T C G A T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAMACTTCAC
NSCACTYVAV
 C G T A G C T A G T A C G T C A A T G C C A G T A G C T G A T C T C G A T A G C
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G